galaxy.ini

galaxy.ini

[server:main]
use = egg:Paste#http
use_threadpool = True
host = 127.0.0.1
port = 8080

[filter:proxy-prefix]
use = egg:PasteDeploy#prefix

[filter:gzip]
use = egg:Paste#gzip

[app:main]
shed_data_manager_config_file = /mnt/galaxy/galaxy-app/config/shed_data_manager_conf.xml
data_manager_config_file = /mnt/galaxy/galaxy-app/config/data_manager_conf.xml.sample
integrated_tool_panel_config = /mnt/galaxy/galaxy-app/config/integrated_tool_panel.xml
whoosh_index_dir = /mnt/galaxy/galaxy-app/database/whoosh_cache
template_cache_path = /mnt/galaxy/galaxy-app/database/template_cache
citation_cache_data_dir = /mnt/galaxy/galaxy-app/database/citations/data
ucsc_build_sites = /mnt/galaxy/galaxy-app/tool-data/shared/ucsc/ucsc_build_sites.txt.sample
object_store_cache_path = /mnt/galaxy/galaxy-app/database/object_store_cache
paste.app_factory = galaxy.web.buildapp:app_factory
visualization_plugins_directory = config/plugins/visualizations
openid_config_file = /mnt/galaxy/galaxy-app/config/openid_conf.xml.sample
openid_consumer_cache_path = /mnt/galaxy/galaxy-app/database/openid_consumer_cache
citation_cache_lock_dir = /mnt/galaxy/galaxy-app/database/citations/locks
new_file_path = /mnt/galaxy/tmp
job_working_directory = /mnt/galaxy/tmp/job_working_directory
external_service_type_config_file = /mnt/galaxy/galaxy-app/config/external_service_types_conf.xml.sample
tool_config_file = /mnt/galaxy/galaxy-app/config/tool_conf.xml,/mnt/galaxy/galaxy-app/config/shed_tool_conf.xml
tool_sheds_config_file = /mnt/galaxy/galaxy-app/config/tool_sheds_conf.xml
file_path = /mnt/galaxy/files
static_enabled = False
conda_debug = False
database_engine_option_max_overflow = 50
nginx_upload_store = /mnt/galaxy/upload_store
shed_tool_data_table_config = /mnt/galaxy/galaxy-app/config/shed_tool_data_table_conf.xml
conda_auto_install = True
database_engine_option_strategy = threadlocal
database_engine_option_pool_size = 20
allow_user_dataset_purge = True
cluster_job_queue_workers = 3
database_engine_option_server_side_cursors = True
rsync_url = rsync://scofield.bx.psu.edu/indexes
library_import_dir = /mnt/galaxy/tmp/library_import_dir
use_pbkdf2 = False
database_connection = postgres://galaxy@localhost:5930/galaxy
tool_dependency_dir = /mnt/galaxy/tools
conda_prefix = /mnt/galaxy/tool_dependencies/_conda
allow_user_deletion = True
cleanup_job = onsuccess
set_metadata_externally = True
outputs_to_working_directory = False
nginx_upload_path = /_upload
enable_unique_workflow_defaults = True
galaxy_data_manager_data_path = /mnt/galaxy/custom-indices
interactive_environment_plugins_directory = config/plugins/interactive_environments
install_database_connection = sqlite:////mnt/galaxy/galaxy-app/config/galaxy_install_db.sqlite?isolation_level=IMMEDIATE
datatypes_config_file = /mnt/galaxy/galaxy-app/config/datatypes_conf.xml
tool_data_table_config_path = /mnt/galaxy/galaxy-app/config/tool_data_table_conf.xml,/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml
enable_openid = True
shed_tool_data_path = /mnt/galaxy/galaxy-app/tool-data/shed_tool_data
ftp_upload_dir = /mnt/galaxy/tmp/ftp
nginx_x_accel_redirect_base = /_x_accel_redirect
len_file_path = /mnt/galaxy/galaxy-app/tool-data/len
track_jobs_in_database = True
conda_auto_init = True
allow_library_path_paste = True
builds_file_path = /mnt/galaxy/galaxy-app/tool-data/shared/ucsc/builds.txt
enable_job_recovery = True
dynamic_proxy_manage = False
retry_metadata_internally = True
conda_ensure_channels = iuc,bioconda,conda-forge,defaults
dynamic_proxy_bind_port = 8800
migrated_tools_config = /mnt/galaxy/galaxy-app/config/migrated_tools_conf.xml
ftp_upload_site = 52.54.147.188
retry_job_output_collection = 10
cluster_files_directory = /mnt/galaxy/tmp/pbs
allow_user_creation = False
require_login = True
admin_users = x@micropathology.com,x@micropathology.com