| {"name":["All Taxa"],"taxonid":[0],"taxongroup":["None"],"children":[{"name":["Betula mean pollen-grain diameter"],"taxonid":[30],"taxongroup":["BIM"]},{"name":["Indeterminable"],"taxonid":[312],"taxongroup":["UPA"],"children":[{"name":["Indeterminable undiff."],"taxonid":[905],"taxongroup":["UPA"]},{"name":["Indeterminable (triporate)"],"taxonid":[2963],"taxongroup":["UPA"]},{"name":["Indeterminable (reticulate)"],"taxonid":[19659],"taxongroup":["UPA"]},{"name":["Indeterminable (corroded)"],"taxonid":[34334],"taxongroup":["UPA"]},{"name":["Indeterminable (broken)"],"taxonid":[34946],"taxongroup":["UPA"]},{"name":["Indeterminable (unknown)"],"taxonid":[35429],"taxongroup":["UPA"]},{"name":["Indeterminable (concealed)"],"taxonid":[35430],"taxongroup":["UPA"]},{"name":["Indeterminable (degraded)"],"taxonid":[35431],"taxongroup":["UPA"]},{"name":["Indeterminable (unidentified)"],"taxonid":[35432],"taxongroup":["UPA"]},{"name":["Indeterminable (crumpled)"],"taxonid":[35433],"taxongroup":["UPA"]},{"name":["Indeter |
| keyword | keyword_count | |
|---|---|---|
| r | 947 | |
| python | 356 | |
| rstats | 353 | |
| bioinformatics | 232 | |
| r-package | 217 | |
| machine-learning | 206 | |
| data-science | 174 | |
| data | 111 | |
| data-visualization | 105 |
| # This script generates a stacked-circle plot using data from the | |
| # Neotoma Paleoecology Database and the Native Land Digital dataset | |
| # https://native-land.ca/ | |
| # Code by: Simon J Goring | |
| # I acknowledge my presence as a settler in unceeded territory, and | |
| # undertake this work with humility towards those for whom the effects | |
| # of colonialism are a lived experience. | |
| pacman::p_load_gh("jeromefroe/circlepackeR") | |
| pacman::p_load(jsonlite, sf, geojsonsf, purrr, dplyr, data.tree, treemap) |
This gist is to support an issue on the TonicAI/condenser project.
The config.json is designed to apply to the Neotoma Paleoecology Database, a postgres database (snapshot available here: https://figshare.com/articles/dataset/Neotoma_Database_Snapshot_2021-06-08/14750697)
The issue appears to be that the application hangs at some point in the processing, but it's not clear how to debug the issue.
| @article{Goring2020Some, | |
| publisher = {GitHub}, | |
| title = {Some Github Repo}, | |
| url = {https://github.com/SimonGoring/MadeUpRepo}, | |
| author = {Goring, Simon}, | |
| date = {2020}, | |
| year = {2020}, | |
| } |
This webinar is set up as a "storytelling" session, about how I work through my projects that are intended for publication. In practice this is now how I manage most of my projects that involve some element of data exploration and collaboration. I will be live-coding during the presentation and intend to do so in a way that will allow people to follow along to some degree.
The webinar will be recorded and so people should not feel obligated to code along, or to keep up. If you would like to follow along, or revisit the webinar at a later date, these are the programs and R packages that you will need.
| """ Import libraries and create the connection. If the connection fails check the JSON file. """ | |
| import json | |
| import csv | |
| import re | |
| import psycopg2 | |
| # Set to True if we want to delete the whole database as it runs: | |
| dropall = True |
| #!/bin/bash | |
| curdir=$PWD | |
| RED='\033[1;31m' | |
| YELLOW='\033[1;33m' | |
| GREEN='\033[1;32m' | |
| NC='\033[0m' # No Color | |
| cnt=0 | |
| good=0 | |
| untr=0 | |
| uncom=0 |
