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June 26, 2013 15:05
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statsmodels_tests
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| (vanilla)Toms-MacBook-Pro:python2.7 tom$ python -c "import statsmodels as s; s.test('full')" | |
| Running unit tests for statsmodels | |
| NumPy version 1.7.1 | |
| NumPy is installed in /Users/tom/vanilla/lib/python2.7/site-packages/numpy | |
| Python version 2.7.3 (default, Feb 10 2013, 17:17:55) [GCC 4.2.1 Compatible Apple LLVM 4.2 (clang-425.0.24)] | |
| nose version 1.3.0 | |
| /Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/tsa/vector_ar/var_model.py:339: FutureWarning: The names argument is deprecated and will be removed in the next release. | |
| "removed in the next release.", FutureWarning) | |
| .........................................................................................................................S.....S.......................................................................S.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSSS..SSSSSSSSSSSS........SS...........................................................S.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................S..........S........S...S..........S........S..S........S...S..........S........S..S.......S...S..................................................................................................................../Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/stats/correlation_tools.py:82: UserWarning: maximum iteration reached | |
| warnings.warn('maximum iteration reached') | |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................S...S...S...S...S...S...S...S...S...S...S...S...S...S...S...S...S...S...S..............no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| ..no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| ......./Users/tom/vanilla/lib/python2.7/site-packages/scipy/stats/stats.py:1276: UserWarning: kurtosistest only valid for n>=20 ... continuing anyway, n=15 | |
| int(n)) | |
| ....................................................................joblib not installed. Cannot run in parallel. | |
| .........................................................................................S................SSSSSS..............F.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................Optimization terminated successfully. | |
| Current function value: 5.327270 | |
| Iterations: 334 | |
| Function evaluations: 682 | |
| .......................................................... | |
| ====================================================================== | |
| FAIL: statsmodels.tsa.tests.test_ar.TestARMLEConstant.test_dynamic_predict | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/nose/case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/tsa/tests/test_ar.py", line 159, in test_dynamic_predict | |
| assert_almost_equal(fv, res2.fcdyn[start:end+1], DECIMAL_4) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/utils.py", line 452, in assert_almost_equal | |
| return assert_array_almost_equal(actual, desired, decimal, err_msg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/utils.py", line 812, in assert_array_almost_equal | |
| header=('Arrays are not almost equal to %d decimals' % decimal)) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/utils.py", line 645, in assert_array_compare | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Arrays are not almost equal to 4 decimals | |
| (mismatch 27.9069767442%) | |
| x: array([ 11.23049853, 13.23737915, 19.66416987, 27.00383112, | |
| 33.57868265, 44.90793235, 47.95875227, 45.09355264, | |
| 36.50664185, 28.78826358, 23.48721623, 22.53218482,... | |
| y: array([ 11.23047, 13.23731, 19.66407, 27.00373, 33.57858, 44.90784, | |
| 47.95866, 45.09347, 36.50656, 28.78818, 23.48711, 22.53206, | |
| 25.68737, 31.07822, 38.54836, 45.41845, 49.67139, 49.37283,... | |
| ---------------------------------------------------------------------- | |
| Ran 2762 tests in 455.463s | |
| FAILED (SKIP=62, failures=1) | |
| (vanilla)Toms-MacBook-Pro:python2.7 tom$ |
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| (vanilla)Toms-MacBook-Pro:python2.7 tom$ python -c "import statsmodels as s; s.test('full')" | |
| Running unit tests for statsmodels | |
| NumPy version 1.7.1 | |
| NumPy is installed in /Users/tom/vanilla/lib/python2.7/site-packages/numpy | |
| Python version 2.7.3 (default, Feb 10 2013, 17:17:55) [GCC 4.2.1 Compatible Apple LLVM 4.2 (clang-425.0.24)] | |
| nose version 1.3.0 | |
| /Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/tsa/vector_ar/var_model.py:339: FutureWarning: The names argument is deprecated and will be removed in the next release. | |
| "removed in the next release.", FutureWarning) | |
| .........................................................................................................................S.....S.......................................................................S......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EE..................................E.E............................................................S.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................S..........S........S...S..........S........S..S........S...S..........S........S..S.......S...S..................................................................................................................../Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/stats/correlation_tools.py:82: UserWarning: maximum iteration reached | |
| warnings.warn('maximum iteration reached') | |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................S..............................................................................no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| ..no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| no overlap, power is zero, TODO | |
| ......./Users/tom/vanilla/lib/python2.7/site-packages/scipy/stats/stats.py:1276: UserWarning: kurtosistest only valid for n>=20 ... continuing anyway, n=15 | |
| int(n)) | |
| ..................................................................................................................................................................................................F.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................Optimization terminated successfully. | |
| Current function value: 5.327270 | |
| Iterations: 334 | |
| Function evaluations: 682 | |
| .......................................................... | |
| ====================================================================== | |
| ERROR: statsmodels.graphics.tests.test_correlation.test_plot_corr | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/nose/case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/decorators.py", line 146, in skipper_func | |
| return f(*args, **kwargs) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/tests/test_correlation.py", line 20, in test_plot_corr | |
| fig = plot_corr(corr_matrix, xnames=hie_data.names) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/correlation.py", line 115, in plot_corr | |
| fig.tight_layout() | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/figure.py", line 1543, in tight_layout | |
| rect=rect) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 352, in get_tight_layout_figure | |
| pad=pad, h_pad=h_pad, w_pad=w_pad) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 129, in auto_adjust_subplotpars | |
| tight_bbox_raw = union([ax.get_tightbbox(renderer) for ax in subplots]) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axes.py", line 8895, in get_tightbbox | |
| bb.append(self.title.get_window_extent(renderer)) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 752, in get_window_extent | |
| bbox, info = self._get_layout(self._renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 304, in _get_layout | |
| ismath=False) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/backends/backend_macosx.py", line 159, in get_text_width_height_descent | |
| width, height, descent = self.gc.get_text_width_height_descent(unicode(s), family, size, weight, style) | |
| RuntimeError: CGContextRef is NULL | |
| ====================================================================== | |
| ERROR: statsmodels.graphics.tests.test_correlation.test_plot_corr_grid | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/nose/case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/decorators.py", line 146, in skipper_func | |
| return f(*args, **kwargs) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/tests/test_correlation.py", line 35, in test_plot_corr_grid | |
| fig = plot_corr_grid([corr_matrix] * 2, xnames=hie_data.names) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/correlation.py", line 218, in plot_corr_grid | |
| normcolor=normcolor, ax=ax, cmap=cmap) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/correlation.py", line 115, in plot_corr | |
| fig.tight_layout() | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/figure.py", line 1543, in tight_layout | |
| rect=rect) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 352, in get_tight_layout_figure | |
| pad=pad, h_pad=h_pad, w_pad=w_pad) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 129, in auto_adjust_subplotpars | |
| tight_bbox_raw = union([ax.get_tightbbox(renderer) for ax in subplots]) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axes.py", line 8897, in get_tightbbox | |
| bb_xaxis = self.xaxis.get_tightbbox(renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axis.py", line 1018, in get_tightbbox | |
| renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axis.py", line 1001, in _get_tick_bboxes | |
| extent = tick.label1.get_window_extent(renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 752, in get_window_extent | |
| bbox, info = self._get_layout(self._renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 304, in _get_layout | |
| ismath=False) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/backends/backend_macosx.py", line 159, in get_text_width_height_descent | |
| width, height, descent = self.gc.get_text_width_height_descent(unicode(s), family, size, weight, style) | |
| RuntimeError: CGContextRef is NULL | |
| ====================================================================== | |
| ERROR: statsmodels.graphics.tests.test_regressionplots.TestPlot.test_plot_oth | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/nose/case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/tests/test_regressionplots.py", line 72, in test_plot_oth | |
| plot_partregress_grid(res, exog_idx=[0,1]) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/regressionplots.py", line 466, in plot_partregress_grid | |
| fig = utils.maybe_tight_layout(fig) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/utils.py", line 156, in maybe_tight_layout | |
| fig.tight_layout() | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/figure.py", line 1543, in tight_layout | |
| rect=rect) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 352, in get_tight_layout_figure | |
| pad=pad, h_pad=h_pad, w_pad=w_pad) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 129, in auto_adjust_subplotpars | |
| tight_bbox_raw = union([ax.get_tightbbox(renderer) for ax in subplots]) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axes.py", line 8897, in get_tightbbox | |
| bb_xaxis = self.xaxis.get_tightbbox(renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axis.py", line 1018, in get_tightbbox | |
| renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axis.py", line 1001, in _get_tick_bboxes | |
| extent = tick.label1.get_window_extent(renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 752, in get_window_extent | |
| bbox, info = self._get_layout(self._renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 304, in _get_layout | |
| ismath=False) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/backends/backend_macosx.py", line 159, in get_text_width_height_descent | |
| width, height, descent = self.gc.get_text_width_height_descent(unicode(s), family, size, weight, style) | |
| RuntimeError: CGContextRef is NULL | |
| ====================================================================== | |
| ERROR: statsmodels.graphics.tests.test_regressionplots.TestPlotPandas.test_plot_oth | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/nose/case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/tests/test_regressionplots.py", line 72, in test_plot_oth | |
| plot_partregress_grid(res, exog_idx=[0,1]) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/regressionplots.py", line 466, in plot_partregress_grid | |
| fig = utils.maybe_tight_layout(fig) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/graphics/utils.py", line 156, in maybe_tight_layout | |
| fig.tight_layout() | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/figure.py", line 1543, in tight_layout | |
| rect=rect) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 352, in get_tight_layout_figure | |
| pad=pad, h_pad=h_pad, w_pad=w_pad) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/tight_layout.py", line 129, in auto_adjust_subplotpars | |
| tight_bbox_raw = union([ax.get_tightbbox(renderer) for ax in subplots]) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axes.py", line 8897, in get_tightbbox | |
| bb_xaxis = self.xaxis.get_tightbbox(renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axis.py", line 1018, in get_tightbbox | |
| renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/axis.py", line 1001, in _get_tick_bboxes | |
| extent = tick.label1.get_window_extent(renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 752, in get_window_extent | |
| bbox, info = self._get_layout(self._renderer) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/text.py", line 304, in _get_layout | |
| ismath=False) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/matplotlib/backends/backend_macosx.py", line 159, in get_text_width_height_descent | |
| width, height, descent = self.gc.get_text_width_height_descent(unicode(s), family, size, weight, style) | |
| RuntimeError: CGContextRef is NULL | |
| ====================================================================== | |
| FAIL: statsmodels.tsa.tests.test_ar.TestARMLEConstant.test_dynamic_predict | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/nose/case.py", line 197, in runTest | |
| self.test(*self.arg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/statsmodels-0.5.0-py2.7-macosx-10.8-x86_64.egg/statsmodels/tsa/tests/test_ar.py", line 159, in test_dynamic_predict | |
| assert_almost_equal(fv, res2.fcdyn[start:end+1], DECIMAL_4) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/utils.py", line 452, in assert_almost_equal | |
| return assert_array_almost_equal(actual, desired, decimal, err_msg) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/utils.py", line 812, in assert_array_almost_equal | |
| header=('Arrays are not almost equal to %d decimals' % decimal)) | |
| File "/Users/tom/vanilla/lib/python2.7/site-packages/numpy/testing/utils.py", line 645, in assert_array_compare | |
| raise AssertionError(msg) | |
| AssertionError: | |
| Arrays are not almost equal to 4 decimals | |
| (mismatch 27.9069767442%) | |
| x: array([ 11.23049853, 13.23737915, 19.66416987, 27.00383112, | |
| 33.57868265, 44.90793235, 47.95875227, 45.09355264, | |
| 36.50664185, 28.78826358, 23.48721623, 22.53218482,... | |
| y: array([ 11.23047, 13.23731, 19.66407, 27.00373, 33.57858, 44.90784, | |
| 47.95866, 45.09347, 36.50656, 28.78818, 23.48711, 22.53206, | |
| 25.68737, 31.07822, 38.54836, 45.41845, 49.67139, 49.37283,... | |
| ---------------------------------------------------------------------- | |
| Ran 2777 tests in 460.578s | |
| FAILED (SKIP=19, errors=4, failures=1) |
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