Tom Harrop TomHarrop

## graph.sh
#!/usr/bin/env bash

snakemake \
	--dag \
	--forceall \
	| grep -v "^[[:space:]+]0" | grep -v "\->[[:space:]]0" \
	| dot -Tsvg \
	> graph.svg

## run_minknow.md

      
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                TomHarrop
                / run_minknow.md
            
            
              Last active
              June 3, 2019 10:21
            
              
                Run MinKNOW with Singularity in a ubuntu 16.04 instance
              
          
    Give devices with the ONT vendor id write access.

add the following to /etc/udev/rules.d/ont.rules

SUBSYSTEM=="usb", ATTRS{idVendor}=="2a1d", MODE="0666"
SUBSYSTEM=="usb_device", ATTRS{idVendor}=="2a1d", MODE="0666"
Reload the rules

sudo udevadm control --reload-rules

  
## plot_nanodrop_results.R
#!/usr/bin/env Rscript

library(lubridate)
library(tidyverse)
library(ggplot2)

#############
# FUNCTIONS #
#############

## # r - 2017-07-23_20-38-57.txt
Homebrew build logs for r on macOS 10.12.6
Build date: 2017-07-23 20:38:57

## private_repo.list
# /etc/apt/sources.list.d/private-repo.list
deb [arch=amd64 signed-by=/etc/apt/trusted.gpg.d/private_repo.gpg] file:/usr/local/mydebs ./

## th.Rmd
---
output:
  rmarkdown::tufte_handout:
    default
header-includes:
  \usepackage{caption}
  \captionsetup[figure]{labelfont=bf}
  \renewcommand{\thefigure}{S\arabic{figure}}
---

## gist:70ca5b94315d9141198b
#!/bin/sh
# Credit thorsteneckel who made the how-to that is the basis for this
# script, see https://gist.github.com/thorsteneckel/c0610fb415c8d0486bce

echo "This script will install forked-daapd in FreeBSD 10.1. The script is not"
echo "very polished, so you might want to look through it before running it."
read -p "Continue? [y/N] " yn
if [ "$yn" != "y" ]; then
	exit
fi
	#!/usr/bin/env bash

	snakemake \
	--dag \
	--forceall \
	\| grep -v "^[[:space:]+]0" \| grep -v "\->[[:space:]]0" \
	\| dot -Tsvg \
	> graph.svg
	#!/usr/bin/env Rscript

	library(lubridate)
	library(tidyverse)
	library(ggplot2)

	#############
	# FUNCTIONS #
	#############
	Homebrew build logs for r on macOS 10.12.6
	Build date: 2017-07-23 20:38:57
	# /etc/apt/sources.list.d/private-repo.list
	deb [arch=amd64 signed-by=/etc/apt/trusted.gpg.d/private_repo.gpg] file:/usr/local/mydebs ./
	---
	output:
	rmarkdown::tufte_handout:
	default
	header-includes:
	\usepackage{caption}
	\captionsetup[figure]{labelfont=bf}
	\renewcommand{\thefigure}{S\arabic{figure}}
	---
	#!/bin/sh
	# Credit thorsteneckel who made the how-to that is the basis for this
	# script, see https://gist.github.com/thorsteneckel/c0610fb415c8d0486bce

	echo "This script will install forked-daapd in FreeBSD 10.1. The script is not"
	echo "very polished, so you might want to look through it before running it."
	read -p "Continue? [y/N] " yn
	if [ "$yn" != "y" ]; then
	exit
	fi