Tom Nicholas TomNicholas
TomNicholas
/ autostorm.py
Last active
May 20, 2019 15:48
Example script to submit a BOUT++ batch job based on a configuration file
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| import configparser | |
| from warnings import warn | |
| from pathlib import Path | |
| from collections import OrderedDict | |
| from pprint import pprint | |
| from datetime import timedelta | |
| import subprocess | |
| import git | |
| from humanfriendly import format_timespan |
TomNicholas
/ jexecute.py
Last active
January 2, 2020 19:13
Wrapper function to execute a Jupyter notebook from python
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| from pathlib import Path | |
| import nbformat | |
| from nbconvert.preprocessors import ExecutePreprocessor, CellExecutionError | |
| def execute_notebook(input_notebook_file, output_notebook_file='output.ipynb', | |
| run_path='./', timeout=600, kernel_name='', **kwargs): | |
| """ | |
| Executes a single jupyter notebook, and writes the results out into a |
TomNicholas
/ mayavi_3D_plot.py
Created
December 24, 2019 14:23
Fabio's implementation of 3D plotting with mayavi
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| from netCDF4 import Dataset | |
| import numpy as np | |
| import scipy.interpolate | |
| import scipy.io | |
| import matplotlib.pyplot as plt | |
| import math | |
| def extract_region(var, regions, ir, yguards=True): | |
| """ | |
| Extract the data from an N-dimensional (with N=2 or N=4) variable corresponding to a given region |
TomNicholas
/ squashoutput.ipynb
Created
January 6, 2020 15:57
Chronicling of various attempts to use xarray, dask & zarr to squash down many GB's of netCDF data into fewer files for xBOUT.
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TomNicholas
/ unit_testing.ipynb
Created
January 6, 2020 18:55
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TomNicholas
/ groupby_bins_count.ipynb
Last active
June 10, 2021 14:48
histogramming in xarray with numpy_groupies
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TomNicholas
/ profiling_xhistogram.ipynb
Last active
June 14, 2021 21:56
Profiling xhistogram (+ numba)
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TomNicholas
/ CMIP6_units.ipynb
Last active
July 8, 2021 17:47
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TomNicholas
/ xgcm_dask_test.ipynb
Last active
October 1, 2021 16:22
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TomNicholas
/ xgcm_boundary_conditions.ipynb
Created
October 8, 2021 20:19
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