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April 20, 2020 20:23
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make sphinx
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| [100%] Generating API documentation with Sphinx in /gudhi-devel/build/version/build/python/sphinx/ | |
| Running Sphinx v2.3.0 | |
| making output directory... done | |
| WARNING: html_static_path entry '_static' does not exist | |
| building [mo]: targets for 0 po files that are out of date | |
| building [html]: targets for 32 source files that are out of date | |
| updating environment: [new config] 32 added, 0 changed, 0 removed | |
| checking for /gudhi-devel/build/version/biblio/how_to_cite_cgal.bib in bibtex cache... not found | |
| parsing bibtex file /gudhi-devel/build/version/biblio/how_to_cite_cgal.bib... parsed 106 entries | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... not found | |
| parsing bibtex file /gudhi-devel/build/version/biblio/bibliography.bib... parsed 92 entries | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| checking for /gudhi-devel/build/version/biblio/bibliography.bib in bibtex cache... up to date | |
| /gudhi-devel/build/version/python/doc/alpha_complex_user.rst:96: WARNING: Definition list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/python/doc/alpha_complex_user.rst:103: WARNING: Definition list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/python/doc/alpha_complex_user.rst:104: WARNING: Definition list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/python/doc/alpha_complex_user.rst:105: WARNING: Definition list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/python/doc/alpha_complex_user.rst:106: WARNING: Definition list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/python/doc/nerve_gic_complex_user.rst:318: WARNING: duplicate citation Carriere17c, other instance in /gudhi-devel/build/version/python/doc/nerve_gic_complex_ref.rst | |
| /gudhi-devel/build/version/python/doc/persistence_graphical_tools_user.rst:44: WARNING: Exception occurred in plotting persistence_graphical_tools_user-2 | |
| from /gudhi-devel/build/version/python/doc/persistence_graphical_tools_user.rst: | |
| Traceback (most recent call last): | |
| File "/home/vincent/.local/lib/python3.6/site-packages/matplotlib/sphinxext/plot_directive.py", line 503, in run_code | |
| exec(code, ns) | |
| File "<string>", line 8, in <module> | |
| File "/gudhi-devel/build/version/build/python/gudhi/persistence_graphical_tools.py", line 258, in plot_persistence_diagram | |
| persistence = _array_handler(persistence) | |
| File "/gudhi-devel/build/version/build/python/gudhi/persistence_graphical_tools.py", line 54, in _array_handler | |
| if isinstance(a[0][1], np.float64) or isinstance(a[0][1], float): | |
| IndexError: list index out of range | |
| /gudhi-devel/build/version/python/doc/persistence_graphical_tools_user.rst:81: WARNING: Exception occurred in plotting persistence_graphical_tools_user-4 | |
| from /gudhi-devel/build/version/python/doc/persistence_graphical_tools_user.rst: | |
| Traceback (most recent call last): | |
| File "/home/vincent/.local/lib/python3.6/site-packages/matplotlib/sphinxext/plot_directive.py", line 503, in run_code | |
| exec(code, ns) | |
| File "<string>", line 13, in <module> | |
| File "/gudhi-devel/build/version/build/python/gudhi/persistence_graphical_tools.py", line 258, in plot_persistence_diagram | |
| persistence = _array_handler(persistence) | |
| File "/gudhi-devel/build/version/build/python/gudhi/persistence_graphical_tools.py", line 54, in _array_handler | |
| if isinstance(a[0][1], np.float64) or isinstance(a[0][1], float): | |
| IndexError: list index out of range | |
| /gudhi-devel/build/version/python/doc/persistent_cohomology_user.rst:116: WARNING: duplicate citation DBLP:journals/dcg/SilvaMV11, other instance in /gudhi-devel/build/version/python/doc/index.rst | |
| /gudhi-devel/build/version/python/doc/persistent_cohomology_user.rst:116: WARNING: duplicate citation DBLP:journals/corr/abs-1208-5018, other instance in /gudhi-devel/build/version/python/doc/index.rst | |
| /gudhi-devel/build/version/python/doc/persistent_cohomology_user.rst:116: WARNING: duplicate citation DBLP:conf/esa/BoissonnatDM13, other instance in /gudhi-devel/build/version/python/doc/index.rst | |
| /gudhi-devel/build/version/python/doc/simplex_tree_user.rst:71: WARNING: duplicate citation boissonnatmariasimplextreealgorithmica, other instance in /gudhi-devel/build/version/python/doc/index.rst | |
| /gudhi-devel/build/version/build/python/gudhi/wasserstein/barycenter.py:docstring of gudhi.wasserstein.barycenter.lagrangian_barycenter:23: WARNING: Bullet list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/build/python/gudhi/wasserstein/barycenter.py:docstring of gudhi.wasserstein.barycenter.lagrangian_barycenter:29: WARNING: Bullet list ends without a blank line; unexpected unindent. | |
| /gudhi-devel/build/version/python/doc/wasserstein_distance_user.rst:169: WARNING: duplicate citation Kerber:2017:GHC:3047249.3064175, other instance in /gudhi-devel/build/version/python/doc/bottleneck_distance_user.rst | |
| /gudhi-devel/build/version/python/doc/witness_complex_user.rst:131: WARNING: duplicate citation boissonnatmariasimplextreealgorithmica, other instance in /gudhi-devel/build/version/python/doc/simplex_tree_user.rst | |
| WARNING: duplicate label for keys DBLP:journals/algorithmica/EfratIK01 and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys Kerber:2017:GHC:3047249.3064175 and cgal:eb-19b | |
| WARNING: duplicate label for keys kaczynski2004computational and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys peikert2012topological and cgal:eb-19b | |
| WARNING: duplicate label for keys boissonnatmariasimplextreealgorithmica and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys DBLP:journals/dcg/SilvaMV11 and cgal:eb-19b | |
| WARNING: duplicate label for keys Carriere17c and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys Carriere17c and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys Dey13 and cgal:eb-19b | |
| WARNING: duplicate label for keys Carriere16 and DBLP:journals/corr/abs-1208-5018 | |
| WARNING: duplicate label for keys DBLP:journals/dcg/SilvaMV11 and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys DBLP:journals/corr/abs-1208-5018 and cgal:eb-19b | |
| WARNING: duplicate label for keys DBLP:conf/esa/BoissonnatDM13 and DBLP:journals/corr/abs-1208-5018 | |
| WARNING: duplicate label for keys Munkres-elementsalgtop1984 and DBLP:conf/esa/BoissonnatDM13 | |
| WARNING: duplicate label for keys sheehy13linear and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys buchet16efficient and cgal:eb-19b | |
| WARNING: duplicate label for keys cavanna15geometric and DBLP:journals/corr/abs-1208-5018 | |
| WARNING: duplicate label for keys cavanna15visualizing and DBLP:conf/esa/BoissonnatDM13 | |
| WARNING: duplicate label for keys boissonnatmariasimplextreealgorithmica and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys tangentialcomplex2014 and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys Kerber:2017:GHC:3047249.3064175 and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys 10.5555/3327546.3327645 and cgal:eb-19b | |
| WARNING: duplicate label for keys turner2014frechet and DBLP:journals/corr/abs-1208-5018 | |
| WARNING: duplicate label for keys boissonnatmariasimplextreealgorithmica and cgal:hdj-t-19b | |
| WARNING: duplicate label for keys de2004topological and cgal:eb-19b | |
| looking for now-outdated files... none found | |
| pickling environment... done | |
| checking consistency... done | |
| preparing documents... done | |
| writing output... [100%] witness_complex_user | |
| /gudhi-devel/build/version/build/python/gudhi/point_cloud/dtm.py:docstring of gudhi.point_cloud.dtm.DistanceToMeasure:1: WARNING: citation not found: dtm | |
| generating indices... genindex py-modindexdone | |
| highlighting module code... [100%] gudhi.witness_complex | |
| writing additional pages... searchdone | |
| copying images... [100%] ../../doc/Witness_complex/swit.svg | |
| copying downloadable files... [100%] example/diagram_vectorizations_distances_kernels.py | |
| copying static files... ... done | |
| copying extra files... done | |
| dumping search index in English (code: en)... done | |
| dumping object inventory... done | |
| build succeeded, 43 warnings. | |
| The HTML pages are in ../../build/python/sphinx. | |
| The name of the builder is: htmlCopying sphinx_paramlinks stylesheet... done | |
| [100%] Built target sphinx |
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