Upload recursively to sage synapse using synapse python client

synapse_upload_folder.py

import synapseclient
import pathlib
from synapseclient import Folder, File


exclude_folders = (
    '.nextflow',
    'probability-maps',
    'qc',
    'registration',
    'segmentation'
)

include_folders = ('quantification', )

def upload_to_parent(path, parent, syn):
    p = pathlib.Path(path)
    if not p.is_dir():
        if set(include_folders).intersection(p.parts) > 0:
            # print(p)
            top_f = File(str(p), parent=parent)
            syn.store(top_f)
    else:
        for i in p.iterdir():
            if not i.is_dir():
                if len(set(include_folders).intersection(i.parts)) > 0:
                    # print(i)
                    l1_f = File(str(i), parent=parent)
                    syn.store(l1_f)
            else:
                if len(set(exclude_folders).intersection(i.parts)) == 0:
                    # print(i)
                    l1_p = Folder(i.name, parent=parent)
                    l1_p = syn.store(l1_p)
                    upload_to_parent(i, l1_p, syn)

                    
syn = synapseclient.Synapse()
syn.login()

syn_f = syn.get('syn123')
upload_to_parent(r'path/to/local/dir', syn_f, syn)

syn.logout()