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  Stack trace:

  1  ~/Library/Application Support/pypoetry/venv/lib/python3.11/site-packages/poetry/utils/env.py:1523 in _run
      1521│ 
      1522│             if input_:
    → 1523│                 output = subprocess.run(
      1524│                     command,
      1525│                     stdout=subprocess.PIPE,

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<snip>

[tool.poetry.dependencies]
python = "^3.11"
PyMySQL = "^1.0.2"
attrs = "^21.4.0"
beautifulsoup4 = "^4.11.0"
biopython = "^1.79"
click = "^8.1.3"
click-aliases = "^1.0.1"

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import keras
from keras.layers import Conv3D, MaxPooling3D, Conv3DTranspose, Input
from keras.models import Model

def FCN3DNet():

    inputLayerA = Input(shape=(96,96,96,1))
    inputLayerB = Input(shape=(96,96,96,1))

    totalInput = keras.layers.concatenate([inputLayerA, inputLayerB])

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import SimpleITK as sitk
import numpy as np

## Just something I had lying around
inputImage = "ct.nii"

## Load the image. Must be a simpleITK image for this stage to work!
startImage = sitk.ReadImage(inputImage)

## factors to downsize by, this will take a 512x512x118 image to 128x128x118