Created
February 7, 2023 11:28
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pyproject.toml excerpt
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<snip> | |
[tool.poetry.dependencies] | |
python = "^3.11" | |
PyMySQL = "^1.0.2" | |
attrs = "^21.4.0" | |
beautifulsoup4 = "^4.11.0" | |
biopython = "^1.79" | |
click = "^8.1.3" | |
click-aliases = "^1.0.1" | |
furl = "^2.1.3" | |
gffutils = "^0.11.1" | |
humanfriendly = "^10.0" | |
ijson = "^3.1.4" | |
intervaltree = "^3.1.0" | |
jsonschema = "^4.17" | |
lxml = "^4.9.1" | |
more-itertools = "^9.0" | |
obonet = "^0.3.0" | |
pandas = "^1.5.1" | |
PyPika = "^0.48.8" | |
pyyaml = "6.0" | |
requests = "^2.28.1" | |
retry = "^0.9.2" | |
scikit-learn = "^1.1.3" | |
semver = "^2.13.0" | |
slack_sdk = "^3.19.4" | |
sqlitedict = "^2.0.0" | |
TatSu = "5.8.2" | |
textblob = "0.15.3" | |
throttler = "^1.2.0" | |
psycopg2= "2.9.3" | |
nltk = "^3.8.1" | |
openpyxl = "^3.0.10" | |
pyopenssl = "^23.0.0" | |
pybigwig = "^0.3.18" | |
bed-reader = "^0.2.29" | |
twobitreader = "^3.1.7" | |
cython = "^0.29.33" | |
[tool.poetry.dev-dependencies] | |
pytest = "^7.2.0" | |
[build-system] | |
requires = ["poetry-core>=1.0.0"ß] | |
build-backend = "poetry.core.masonry.api" | |
[tool.pytest.ini_options] | |
xfail_strict = true | |
filterwarnings = "ignore::DeprecationWarning" | |
markers = [ | |
"slow: Tests that take a long time", | |
"db: Test that require access to our database", | |
] |
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