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const gulp = require('gulp'); | |
const del = require('del'); | |
const typescript = require('gulp-typescript'); | |
const tscConfig = require('./tsconfig.json'); | |
// clean the contents of the distribution directory | |
gulp.task('clean', function () { | |
return del('dist/**/*'); | |
}); |
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[defaults] | |
allow_world_readable_tmpfiles=True | |
callback_whitelist = profile_tasks |
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<% | |
root = h.url_for( "/" ) | |
app_root = root + "plugins/visualizations/popularity/static/" | |
title = "Tool popularity derived from dataset '" + hda.name + "'" | |
## creating_job = hda.creating_job.id | |
creating_job = trans.security.encode_id( hda.creating_job.id ) | |
creating_job_id = hda.creating_job.id | |
tool1 = hda.creating_job.tool_id | |
# optionally bootstrap data from dprov |
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{ | |
"user": { | |
"debug": true, | |
"delay": 0.25, | |
"error_color": "D02000", | |
"gutter_theme": "Packages/SublimeLinter/gutter-themes/Blueberry/cross/Blueberry - cross.gutter-theme", | |
"gutter_theme_excludes": [], | |
"lint_mode": "save only", | |
"linters": { | |
"flake8": { |
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import boto | |
import boto.s3.connection | |
from boto.ec2.regioninfo import RegionInfo | |
# Provide access info for your cloud and your account | |
A_KEY = "" | |
S_KEY = "" | |
region_name = 'Chameleon' | |
region_endpoint = 'openstack.tacc.chameleoncloud.org' | |
ec2_conn_path = "/services/Cloud" |
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... | |
galaxy.queue_worker INFO 2015-05-06 16:33:13,705 Binding and starting galaxy control worker for main | |
Starting server in PID 3058. | |
serving on http://127.0.0.1:8080 | |
galaxy.jobs.runners.drmaa DEBUG 2015-05-06 16:33:13,898 (114/115) state change: job finished, but failed | |
galaxy.jobs.runners.slurm WARNING 2015-05-06 16:33:13,942 (114/115) Job not found, assuming job check exceeded MinJobAge and completing as successful | |
galaxy.datatypes.metadata DEBUG 2015-05-06 16:33:14,202 setting metadata externally failed for HistoryDatasetAssociation 117: External set_meta() not called | |
[bam_index_core] the alignment is not sorted (ERR030882.10002135): 3053935 > 3053755 in 25-th chr | |
[bam_index_build2] fail to index the BAM file. | |
*** Error in `python': double free or corruption (out): 0x00007faff008e9b0 *** |
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from cm.services.apps import ApplicationService | |
import logging | |
log = logging.getLogger('cloudman') | |
class BaseJobManager(ApplicationService): | |
def __init__(self, app): | |
super(BaseJobManager, self).__init__(app) |
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