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aflaxman / 2022_08_25c_re_poisson_model_w_offset_in_bambi.ipynb
Created August 25, 2022 19:14
Random Effects Poisson Model with Offset in Bambi
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View numpyro_abc_kernel.py
import numpy as np, pandas as pd, matplotlib.pyplot as plt
from collections import namedtuple
from jax import random, lax
from jax.flatten_util import ravel_pytree
import jax.numpy as jnp
import numpyro
import numpyro.distributions as dist
from numpyro.infer import MCMC, util, init_to_sample
from numpyro.infer.mcmc import MCMCKernel
View numpyro_metropolis_kernel_2.py
from collections import namedtuple
from jax import random
from jax.flatten_util import ravel_pytree
import jax.numpy as jnp
import numpyro
import numpyro.distributions as dist
from numpyro.infer import MCMC, util
from numpyro.infer.mcmc import MCMCKernel
MetState = namedtuple("MetState", ["z", "rng_key"])
View numpyro_metropolis_kernel.py
from collections import namedtuple
from jax import random
from jax.flatten_util import ravel_pytree
import jax.numpy as jnp
import numpyro
import numpyro.distributions as dist
from numpyro.infer import MCMC, util
from numpyro.infer.mcmc import MCMCKernel
MetState = namedtuple("MetState", ["z", "rng_key"]) # does it matter if it is called z or u?
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