Pairwise ranking using scikit-learn LinearSVC

ranking.py

"""
Implementation of pairwise ranking using scikit-learn LinearSVC

Reference: "Large Margin Rank Boundaries for Ordinal Regression", R. Herbrich,
    T. Graepel, K. Obermayer.

Authors: Fabian Pedregosa <fabian@fseoane.net>
         Alexandre Gramfort <alexandre.gramfort@inria.fr>
"""

import itertools
import numpy as np

from sklearn import svm, linear_model, cross_validation


def transform_pairwise(X, y):
    """Transforms data into pairs with balanced labels for ranking

    Transforms a n-class ranking problem into a two-class classification
    problem. Subclasses implementing particular strategies for choosing
    pairs should override this method.

    In this method, all pairs are choosen, except for those that have the
    same target value. The output is an array of balanced classes, i.e.
    there are the same number of -1 as +1

    Parameters
    ----------
    X : array, shape (n_samples, n_features)
        The data
    y : array, shape (n_samples,) or (n_samples, 2)
        Target labels. If it's a 2D array, the second column represents
        the grouping of samples, i.e., samples with different groups will
        not be considered.

    Returns
    -------
    X_trans : array, shape (k, n_feaures)
        Data as pairs
    y_trans : array, shape (k,)
        Output class labels, where classes have values {-1, +1}
    """
    X_new = []
    y_new = []
    y = np.asarray(y)
    if y.ndim == 1:
        y = np.c_[y, np.ones(y.shape[0])]
    comb = itertools.combinations(range(X.shape[0]), 2)
    for k, (i, j) in enumerate(comb):
        if y[i, 0] == y[j, 0] or y[i, 1] != y[j, 1]:
            # skip if same target or different group
            continue
        X_new.append(X[i] - X[j])
        y_new.append(np.sign(y[i, 0] - y[j, 0]))
        # output balanced classes
        if y_new[-1] != (-1) ** k:
            y_new[-1] = - y_new[-1]
            X_new[-1] = - X_new[-1]
    return np.asarray(X_new), np.asarray(y_new).ravel()


class RankSVM(svm.LinearSVC):
    """Performs pairwise ranking with an underlying LinearSVC model

    Input should be a n-class ranking problem, this object will convert it
    into a two-class classification problem, a setting known as
    `pairwise ranking`.

    See object :ref:`svm.LinearSVC` for a full description of parameters.
    """

    def fit(self, X, y):
        """
        Fit a pairwise ranking model.

        Parameters
        ----------
        X : array, shape (n_samples, n_features)
        y : array, shape (n_samples,) or (n_samples, 2)

        Returns
        -------
        self
        """
        X_trans, y_trans = transform_pairwise(X, y)
        super(RankSVM, self).fit(X_trans, y_trans)
        return self

    def predict(self, X):
        """
        Predict an ordering on X. For a list of n samples, this method
        returns a list from 0 to n-1 with the relative order of the rows of X.

        Parameters
        ----------
        X : array, shape (n_samples, n_features)

        Returns
        -------
        ord : array, shape (n_samples,)
            Returns a list of integers representing the relative order of
            the rows in X.
        """
        if hasattr(self, 'coef_'):
            np.argsort(np.dot(X, self.coef_.T))
        else:
            raise ValueError("Must call fit() prior to predict()")

    def score(self, X, y):
        """
        Because we transformed into a pairwise problem, chance level is at 0.5
        """
        X_trans, y_trans = transform_pairwise(X, y)
        return np.mean(super(RankSVM, self).predict(X_trans) == y_trans)


if __name__ == '__main__':
    # as showcase, we will create some non-linear data
    # and print the performance of ranking vs linear regression

    np.random.seed(1)
    n_samples, n_features = 300, 5
    true_coef = np.random.randn(n_features)
    X = np.random.randn(n_samples, n_features)
    noise = np.random.randn(n_samples) / np.linalg.norm(true_coef)
    y = np.dot(X, true_coef)
    y = np.arctan(y) # add non-linearities
    y += .1 * noise  # add noise
    Y = np.c_[y, np.mod(np.arange(n_samples), 5)]  # add query fake id
    cv = cross_validation.KFold(n_samples, 5)
    train, test = iter(cv).next()

    # make a simple plot out of it
    import pylab as pl
    pl.scatter(np.dot(X, true_coef), y)
    pl.title('Data to be learned')
    pl.xlabel('<X, coef>')
    pl.ylabel('y')
    pl.show()

    # print the performance of ranking
    rank_svm = RankSVM().fit(X[train], Y[train])
    print 'Performance of ranking ', rank_svm.score(X[test], Y[test])

    # and that of linear regression
    ridge = linear_model.RidgeCV(fit_intercept=True)
    ridge.fit(X[train], y[train])
    X_test_trans, y_test_trans = transform_pairwise(X[test], y[test])
    score = np.mean(np.sign(np.dot(X_test_trans, ridge.coef_)) == y_test_trans)
    print 'Performance of linear regression ', score

This code is outdated and not compatible with Python3. Thus, the corrected version of this code is provided as follows:

import itertools
import numpy as np

from sklearn import svm, linear_model
from sklearn.model_selection import KFold


def transform_pairwise(X, y):
    """Transforms data into pairs with balanced labels for ranking
    Transforms a n-class ranking problem into a two-class classification
    problem. Subclasses implementing particular strategies for choosing
    pairs should override this method.
    In this method, all pairs are choosen, except for those that have the
    same target value. The output is an array of balanced classes, i.e.
    there are the same number of -1 as +1
    Parameters
    ----------
    X : array, shape (n_samples, n_features)
        The data
    y : array, shape (n_samples,) or (n_samples, 2)
        Target labels. If it's a 2D array, the second column represents
        the grouping of samples, i.e., samples with different groups will
        not be considered.
    Returns
    -------
    X_trans : array, shape (k, n_feaures)
        Data as pairs
    y_trans : array, shape (k,)
        Output class labels, where classes have values {-1, +1}
    """
    X_new = []
    y_new = []
    y = np.asarray(y)
    if y.ndim == 1:
        y = np.c_[y, np.ones(y.shape[0])]
    comb = itertools.combinations(range(X.shape[0]), 2)
    for k, (i, j) in enumerate(comb):
        if y[i, 0] == y[j, 0] or y[i, 1] != y[j, 1]:
            # skip if same target or different group
            continue
        X_new.append(X[i] - X[j])
        y_new.append(np.sign(y[i, 0] - y[j, 0]))
        # output balanced classes
        if y_new[-1] != (-1) ** k:
            y_new[-1] = - y_new[-1]
            X_new[-1] = - X_new[-1]
    return np.asarray(X_new), np.asarray(y_new).ravel()


class RankSVM(svm.LinearSVC):
    """Performs pairwise ranking with an underlying LinearSVC model
    Input should be a n-class ranking problem, this object will convert it
    into a two-class classification problem, a setting known as
    `pairwise ranking`.
    See object :ref:`svm.LinearSVC` for a full description of parameters.
    """

    def fit(self, X, y):
        """
        Fit a pairwise ranking model.
        Parameters
        ----------
        X : array, shape (n_samples, n_features)
        y : array, shape (n_samples,) or (n_samples, 2)
        Returns
        -------
        self
        """
        X_trans, y_trans = transform_pairwise(X, y)
        super(RankSVM, self).fit(X_trans, y_trans)
        return self

    def predict(self, X):
        """
        Predict an ordering on X. For a list of n samples, this method
        returns a list from 0 to n-1 with the relative order of the rows of X.
        Parameters
        ----------
        X : array, shape (n_samples, n_features)
        Returns
        -------
        ord : array, shape (n_samples,)
            Returns a list of integers representing the relative order of
            the rows in X.
        """
        if hasattr(self, 'coef_'):
            np.argsort(np.dot(X, self.coef_.T))
        else:
            raise ValueError("Must call fit() prior to predict()")

    def score(self, X, y):
        """
        Because we transformed into a pairwise problem, chance level is at 0.5
        """
        X_trans, y_trans = transform_pairwise(X, y)
        return np.mean(super(RankSVM, self).predict(X_trans) == y_trans)


if __name__ == '__main__':
    # as showcase, we will create some non-linear data
    # and print the performance of ranking vs linear regression

    np.random.seed(1)
    n_samples, n_features = 300, 5
    true_coef = np.random.randn(n_features)
    X = np.random.randn(n_samples, n_features)
    noise = np.random.randn(n_samples) / np.linalg.norm(true_coef)
    y = np.dot(X, true_coef)
    y = np.arctan(y)  # add non-linearities
    y += .1 * noise  # add noise
    Y = np.c_[y, np.mod(np.arange(n_samples), 5)]  # add query fake id
    cv = KFold(n_splits=5)
    train, test = cv.split(X, y).__next__()

    # make a simple plot out of it
    import pylab as pl

    pl.scatter(np.dot(X, true_coef), y)
    pl.title('Data to be learned')
    pl.xlabel('<X, coef>')
    pl.ylabel('y')
    pl.show()

    # print the performance of ranking
    rank_svm = RankSVM().fit(X[train], Y[train])
    print('Performance of ranking ', rank_svm.score(X[test], Y[test]))

    # and that of linear regression
    ridge = linear_model.RidgeCV(fit_intercept=True)
    ridge.fit(X[train], y[train])
    X_test_trans, y_test_trans = transform_pairwise(X[test], y[test])
    score = np.mean(np.sign(np.dot(X_test_trans, ridge.coef_)) == y_test_trans)
    print('Performance of linear regression ', score)

I am very new to python code and ML, i see that this was tested with created data; how would I use this code with a real dataset that I already have partitioned into X and y?
Should I start on the cv KFold line and continue with the train, test=cv.split(X,y).next(), skipping all the lines before these? However, since this is a main not sure how I will add my data there. many thanks for your help with this

can we use this code to transfer multi-label to pairwise label?