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❯ G_MESSAGES_DEBUG=Timings rofi -show drun | |
(process:95196): Timings-DEBUG: 03:04:49.471: 0.000001 (0.000000): Started | |
(process:95196): Timings-DEBUG: 03:04:49.471: 0.000135 (0.000135): ../source/rofi.c:main:902 | |
(process:95196): Timings-DEBUG: 03:04:49.472: 0.000756 (0.000621): ../source/rofi.c:main:953 | |
(process:95196): Timings-DEBUG: 03:04:49.472: 0.000874 (0.000118): ../source/rofi.c:main:960 Setup Locale | |
(process:95196): Timings-DEBUG: 03:04:49.473: 0.001704 (0.000830): ../source/rofi.c:main:962 Collect MODES | |
(process:95196): Timings-DEBUG: 03:04:49.473: 0.001736 (0.000032): ../source/rofi.c:main:964 Setup MODES | |
(process:95196): Timings-DEBUG: 03:04:49.473: 0.001763 (0.000027): ../source/rofi.c:main:968 Setup mainloop | |
(process:95196): Timings-DEBUG: 03:04:49.473: 0.001920 (0.000157): ../source/rofi.c:main:971 NK Bindings | |
(process:95196): Timings-DEBUG: 03:04:49.473: 0.002187 (0.000267): ../source/xcb.c:display_setup:1663 Open Display |
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/** | |
* rofi -dump-theme output. | |
* Rofi version: 1.7.5-dev | |
**/ | |
* { | |
red: rgba ( 220, 50, 47, 100 % ); | |
selected-active-foreground: var(background); | |
lightfg: rgba ( 88, 104, 117, 100 % ); | |
separatorcolor: var(foreground); | |
urgent-foreground: var(red); |
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configuration { | |
/* modes: "drun,run,filebrowser,window,combi";*/ | |
font: "Mono 12"; | |
/* location: 0;*/ | |
/* yoffset: 0;*/ | |
/* xoffset: 0;*/ | |
/* fixed-num-lines: true;*/ | |
show-icons: true; | |
terminal: "rofi-sensible-terminal"; | |
ssh-client: "ssh"; |
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sudo mount /dev/sda3 /mnt | |
sudo mount /dev/sda1 /mnt/boot/efi | |
for i in /dev /dev/pts /proc /sys /run; do sudo mount -B $i /mnt$i; done | |
sudo cp /etc/resolv.conf /mnt/etc/ | |
sudo chroot /mnt | |
apt install --reinstall linux-generic linux-headers-generic | |
update-initramfs -c -k all | |
exit | |
sudo bootctl --path=/mnt/boot/efi install |
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library(tidygraph) | |
library(purrr) | |
library(dplyr) | |
library(ggraph) | |
# Generate sample data: FRAME1 | |
sample_data <- data.frame(genes = c("G1", "G2", "G3", "G4", "G4", "G5", "G6"), | |
mirna = c("M1", "M1","M1", "M1", "M2", "M2", "M2"), | |
Geneexpression = c(10000, 10000, 5000, 10000, 10000, 5000, 10000), | |
mirnaexpression = c(1000, 1000, 1000, 1000, 2000, 2000, 2000), stringsAsFactors = FALSE) |
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$ journalctl -u reflowlet.service | |
-- Logs begin at Fri 2018-08-17 16:35:59 UTC, end at Fri 2018-08-17 16:41:38 UTC. -- | |
Aug 17 16:36:38 ip-172-31-22-92.us-west-2.compute.internal systemd[1]: Starting reflowlet... | |
Aug 17 16:36:39 ip-172-31-22-92.us-west-2.compute.internal docker[894]: Error response from daemon: No such container: reflowlet.service | |
Aug 17 16:36:39 ip-172-31-22-92.us-west-2.compute.internal docker[1033]: Error: No such container: reflowlet.service | |
Aug 17 16:36:39 ip-172-31-22-92.us-west-2.compute.internal bash[1039]: WARNING! Using --password via the CLI is insecure. Use --password-stdin. | |
Aug 17 16:36:39 ip-172-31-22-92.us-west-2.compute.internal bash[1039]: Login Succeeded | |
Aug 17 16:36:41 ip-172-31-22-92.us-west-2.compute.internal docker[1051]: 1534363366: Pulling from grailbio/reflowlet | |
Aug 17 16:36:41 ip-172-31-22-92.us-west-2.compute.internal docker[1051]: d1426d011624: Pulling fs layer | |
Aug 17 16:36:41 ip-172-31-22-92.us-west-2.compute.internal docker[1051]: ee3565897cb9: Pulling fs layer |
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2018/08/17 19:35:27 reflow version 0.6.8 (go1.10) | |
2018/08/17 19:35:27 reflowlet image grailbio/reflowlet:1534363366 | |
2018/08/17 19:35:27 run ID: 1187b865 | |
2018/08/17 19:35:30 evaluating program /home/user/tmp/workflow-pipelines/reflow/hello.rf | |
(no params) | |
(no arguments) | |
2018/08/17 19:35:31 ec2cluster: pending{} | |
2018/08/17 19:35:31 ec2cluster: allocate {mem:1.0GiB cpu:1 disk:1.0GiB} | |
2018/08/17 19:35:31 ec2cluster: pending{} waiter0{mem:1.0GiB cpu:1 disk:1.0GiB} | |
2018/08/17 19:35:31 ec2cluster: launch t2.small{mem:1.9GiB cpu:1 disk:250.0GiB} pending{mem:1.9GiB cpu:1 disk:250.0GiB} |
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$ docker run --rm -v $(pwd)/data2:/data comics/bowtie2 wgsim -e 0 -N 10000 -1 300 -2 300 -r 0 -R 0 /data/s_cerevisiae.fa /data/sample_seq_1.fastq /data/sample_seq_2.fastq | |
[wgsim] seed = 1524818001 | |
[wgsim_core] calculating the total length of the reference sequence... | |
[wgsim_core] 18 sequences, total length: 12162995 | |
$ ls -alh data2 | |
total 25M | |
drwxr-xr-x 2 alper alper 4.0K Apr 27 11:32 . | |
drwxr-xr-x 4 alper alper 4.0K Apr 27 11:31 .. | |
-rw-r--r-- 1 root root 6.2M Apr 27 11:33 sample_seq_1.fastq |
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Verifying that "alperyilmaz.id" is my Blockstack ID. https://onename.com/alperyilmaz |
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$ cut -f2 Ecoli-cds-protein | cut -c1-3 | sort | uniq -c | sort -nr | |
3715 ATG | |
307 GTG | |
71 TTG | |
2 CTG | |
2 ATT |
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