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@amirkdv
amirkdv / interaction_topology_evolution.py
Last active Jun 8, 2018
An Evolutionary Model for the Emergence of Scale-Free Biological Networks
View interaction_topology_evolution.py
#!/usr/env/bin python3
# USAGE: LIB=work_space python3 interaction_topology_evolution.py
import random
import sys
import itertools
import math
import networkx as nx
import numpy as np
import os
from ctypes import cdll
@amirkdv
amirkdv / simulations.py
Last active Jun 8, 2018
Statistical Analysis of Coherence in LFP recordings
View simulations.py
#!/usr/bin/env python
import sys
import numpy as np
from numpy.fft import rfft, rfftfreq, irfft
from matplotlib import pyplot as plt
from scipy.signal import csd, welch
# install via `pip install git+https://github.com/aaren/wavelets`
from wavelets import WaveletAnalysis
@amirkdv
amirkdv / Allocate ports.md
Last active Aug 29, 2015
Generate deterministic *nix ports for services
View Allocate ports.md

Example usage:

$ python gimme_port.py
usage: gimme_port.py [-r|--resolve] NAME

$ python gimme_port.py muhc.ca.http
29595

$ python gimme_port.py staging.muhc.ca.http
port 31079 is in use by 'nc' (pid: 28569), use --resolve
View docker-entrypoint-dev.md

In a fresh checkout:

cat provision
# #!/bin/bash
#
# echo step 1 >> /report.log
# echo step 2 >> /report.log

docker build -t entrypoint-exp01 .
# ...
@amirkdv
amirkdv / mysqldo.sh
Last active Aug 29, 2015
Cleanly run commands that require mysql running
View mysqldo.sh
#!/bin/bash
# Executes the provided arguments as a shell command with a twist: if mysql is
# not already running: starts mysql, runs the commands, and stops mysql.
# Example usage:
# - mysqldo mysql -u root -p # will open an interactive shell and will stop mysql
# # when you leave the shell
# - mysqldo 'echo "show databases;" | mysql -u root -p"my_password"'
# # note that if your commands involve pipes or anything that the shell
# # interpretter would not pass to mysqldo as arguments, you should wrap the
# # entire command in quotes.
@amirkdv
amirkdv / Transparent Proxy to docker containers.md
Last active Dec 13, 2017
Transparent Proxy to docker containers
View Transparent Proxy to docker containers.md

This is an example of using Linux Kernel's Transparent Proxy to route all TCP traffic to docker containers without having to resort to PROXY protocol which is not supported by some applications (e.g. sshd). To get the demo to work you only need vagrant installed:

git clone [this-gist] tproxy-demo
cd tproxy-demo
vagrant up
@amirkdv
amirkdv / Monitor.md
Last active Nov 20, 2015
Simple HTTP monitor
View Monitor.md

POC simple HTTP monitoring script. First build the docker images:

git clone [this-gist] monitor
cd monitor
docker build -t amirkdv/monitor .

Now start the container, and all sites under sites.yaml will be pinged one after another:

docker run -i -t amirkdv/monitor
@amirkdv
amirkdv / lv_rsync_backup.sh
Last active Jun 6, 2019
Backup an LVM logical volume via Rsync
View lv_rsync_backup.sh
#!/bin/bash
# Backup an entire LVM logical volume via a snapshot LV and rsync
[[ $( whoami ) != 'root' ]] && echo "sudo please" && exit 1
set -o errexit
set -o nounset
# LVM logical volume to backup
lv=book01
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