miniCRAN-Rforge-BioConductor.R

# Wrapper around available.packages ---------------------------------------

index <- function(url, type="source", filters=NULL){
  contribUrl <- contrib.url(url, type=type)
  available.packages(contribUrl, type=type, filters=filters)
}


# CRAN --------------------------------------------------------------------

CRAN <- "http://cran.r-project.org"
index(CRAN)


# Revolution  -------------------------------------------------------------

revoStable <- "http://packages.revolutionanalytics.com/cran/3.1/stable"
index(revoStable)

revoMirror <- "http://cran.revolutionanalytics.com"
index(revoMirror)


# R-forge -----------------------------------------------------------------

rforge <- "http://r-forge.r-project.org"
index(rforge)


# BioConductor ------------------------------------------------------------

bioc <- local({
  on.exit(rm(env))
  env <- new.env()
  evalq(source("http://bioconductor.org/biocLite.R", local=TRUE), env)
  biocinstallRepos()
})

bioc
bioc[grep("BioC", names(bioc))]


index(bioc["BioCsoft"])