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bakerwm / 20190910-manager_R_packages.md
Created Sep 18, 2019
20190910-manager_R_packages
View 20190910-manager_R_packages.md

title: "Manage R packages" date: 2019-09-10T16:59:04+08:00 draft: false categories:

  • Linux
  • basic tags:
  • R
  • update
View deseq2-analysis-template.R
## RNA-seq analysis with DESeq2
## Stephen Turner, @genetics_blog
# RNA-seq data from GSE52202
# http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with
# ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl")
# Import & pre-process ----------------------------------------------------
# Import data from featureCounts
View gist:d5ebdee49bcc171bc5a9
# ATOMIC DATA TYPES IN R
# Character
first.name <- "Kirk"
# Integer
age <- 25
# Numeric
hourly_wage <- 27.25
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