cassavabase nginx setup - sgn-forward file

server { 
       listen 80;
       server_name localhost;
       return 301 https://$host$request_uri;    
}       


server {
       listen 443 default_server;

       ssl on;
       ssl_certificate /etc/ssl/ssl-bundle.crt;
       ssl_certificate_key /etc/ssl/cassavabase.key;

       ssl_session_timeout 100m;

       ssl_protocols TLSv1.2 TLSv1.1;
       ssl_ciphers EECDH+AESGCM:EDH+AESGCM:EECDH:EDH:!MD5:!RC4:!LOW:!MEDIUM:!CAMELLIA:!ECDSA:!DES:!DSS:!3DES:!NULL;
       ssl_prefer_server_ciphers on;

       ssl_dhparam /etc/ssl/dhparams.pem;

       server_name cassavabase.org

#       auth_basic "Restricted";
#       auth_basic_user_file /etc/cxgn/cxgn_password;

       # generous file upload limit of 100MB
       client_max_body_size 100m;

       gzip on;
       gzip_proxied any;
       gzip_types  text/javascript application/javascript application/x-javascript text/plain text/css image/png;

       location /FCF1AC23BAC3E1D9EDEFEE9B010E7702.txt {
           root /var/www;
	   break;
}

       location /jbrowse { 
           root /export/prod/;
           rewrite ^/jbrowse/?$ /jbrowse_cassavabase/JBrowse-1.11.6;
       }
       
       location  ~ ^/gbrowse/bin/gbrowse/ {
       		 rewrite ^/gbrowse/bin/gbrowse/(.*)$  /gb2/gbrowse/ ;
		 }

              
      location ~ ^/gbrowse/bin/gbrowse/(.*)$ {
           proxy_pass http://127.0.0.1:8081/gb2/gbrowse/$1$is_args$args;
      	   proxy_set_header  X-Real-IP  $remote_addr;
	   proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
       	   proxy_set_header  Host $host;
       	   proxy_read_timeout 4m;
	   break;
        }

 	location ~ ^/gb2/gbrowse/(.*)$ {
	   proxy_pass http://127.0.0.1:8081/gb2/gbrowse/$1$is_args$args;
 	   proxy_set_header  X-Real-IP  $remote_addr;
           proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
 	   proxy_set_header  Host $host;
 	   proxy_read_timeout 5m;
	   break;
        }


      location ~ ^/gbrowse/i/(.*)$ {
           proxy_pass http://127.0.0.1:8081/gbrowse/i/$1$is_args$args;
           proxy_set_header  X-Real-IP  $remote_addr;
           proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
           proxy_set_header  Host $host;
           proxy_read_timeout 4m;
           break;
        }


 	location ~ ^/gb2/gbrowse_details/(.*)$ {
	   proxy_pass http://127.0.0.1:8081/gb2/gbrowse_details/$1$is_args$args;
 	   proxy_set_header  X-Real-IP  $remote_addr;
           proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
 	   proxy_set_header  Host $host;
 	   proxy_read_timeout 5m;
	   break;
        }


	# gbrowse static images
	location ~ ^/gbrowse/bin/gbrowse_img/(.*)$ {
           proxy_pass http://127.0.0.1:8081/gb2/gbrowse_img/$1$is_args$args;
       	   proxy_set_header  X-Real-IP  $remote_addr;
	   proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
       	   proxy_set_header  Host $host;
       	   proxy_read_timeout 4m;
	   break;
        }

	# static gbrowse pages (includes icons etc.)
	#
	location ~ ^/gbrowse/(.*)$ {
           proxy_pass http://127.0.0.1:8081/gbrowse/$1$is_args$args;
       	   proxy_set_header  X-Real-IP  $remote_addr;
           proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
       	   proxy_set_header  Host $host;
       	   proxy_read_timeout 5m;
	   break;
        }

	location / {
           proxy_pass http://127.0.0.1:8080;
	   proxy_set_header  X-Real-IP  $remote_addr;
           proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
	   proxy_set_header  Host $host;
	   proxy_read_timeout 100m;
       	}



	# gbrowse_syn
	# ... not yet ...

}

server { 

       listen 80;
       server_name ted.sgn.cornell.edu;

       # generous file upload limit of 10MB
       client_max_body_size 10m;

       gzip on;
       gzip_proxied any;
       gzip_types  text/javascript application/javascript application/x-javascript text/plain  text/css;

       location ~ ^/(.*)$ {
           proxy_pass http://132.236.81.80/$1;
       	   proxy_set_header  X-Real-IP  $remote_addr;
	   proxy_set_header  X-Forwarded-For  $proxy_add_x_forwarded_for;
       	   proxy_set_header  Host $host;
       	   proxy_read_timeout 4m;
       	   break;
        }