brockpalen

#download and install Globus toolkit, get version 6.0
tar -xzf globus_toolkit-6.0.1443479657.tar.gz
cd globus_toolkit-6.0.1443479657

#enable GSI and myproxy for myproxy-login 
./configure --prefix=<INSTALL_PREFIX> --enable-myproxy
make -j 12
make install

#setup location for XSEDE Certificates

brockpalen

#Brock Palen brockp@umich.edu
#   5/2015
#   GridFTP config for Logstash

input {

#track the globus gridftp transfer logs
        file { 
                path => [ "/var/log/gridftp-go.log" ]
                sincedb_path => "/var/run/logstash-gridftp.sincedb"

brockpalen

#include <iostream>
#include <stdlib.h>
#include <sys/time.h>
#include <unistd.h>


//#define DIM 20000
/*****
Total size used should be DIM*DIM*sizeof(double)
compute the matrix multiply dgemm

brockpalen

function [lib, extras] = mpiLibConf
%MATLAB MPI Library overloading for Infiniband and Ethernet Networks
%
%USAGE
%   place in ~/matlab/mpiLibConf.m
%   Update to point to your MPICH / Intel MPI etc location

% mvapich has two extra libraries libmpl.so and libopa.so  
%  use # ldd /home/software/rhel6/mvapich2/1.8/lib/libmpich.so
%   Any libraries from the mpich/mvapich install location need to be included in extras

brockpalen

function benchmarkpct(ncpus)

sched= findResource('scheduler', 'type', 'mpiexec') ;
set(sched, 'EnvironmentSetMethod', 'setenv')
set(sched, 'MpiexecFileName', '/home/software/rhel6/mpiexec/bin/mpiexec')

sched

%get current mpi library
mpiLibConf

brockpalen

#!/usr/bin/python

#Brock Palen
# brockp@umich.edu
#
'''
Takes data in the form of:

metric         number

brockpalen

#compile source on Flux
module load matlab/2014a

mcc -m implicitthreads.m

brockpalen

#run blender in batch, take all settings from those saved in the .blend file
#http://wiki.blender.org/index.php/Doc:2.6/Manual/Render/Command_Line
blender -b blender.blend -o //imagename -F PNG -x 1 -f 1

brockpalen

"message" => "[3743] Wed Jul 16 09:34:54 2014 :: Transfer stats: DATE=20140716133454.587582 HOST=flux-xfer1.engin.umich.edu PROG=globus-gridftp-server NL.EVNT=FTP_INFO START=20140716133453.570157 USER=brockp FILE=/tmp/brockp/linux_x64_64_sfx.exe BUFFER=87380 BLOCK=262144 NBYTES=280590752 VOLUME=/ STREAMS=4 STRIPES=1 DEST=[141.212.30.10] TYPE=RETR CODE=226",

brockpalen

tar -xjf gt<version>-all-source-installer.tar.bz2
cd gt<version>-all-source-installer

./configure --prefix=/home/brockp/gt5.0.4
make globus-data-management-client
make gsi-myproxy

make install