Converting HDF to TXT files

HDFConvert.py

import pandas as pd
import h5py
from pathlib import Path
from tqdm import tqdm

target_dir = Path("./")

for fp in tqdm(list(target_dir.iterdir())):
    if fp.suffix != ".hdf":
        continue
    # Load the file and convert to a pandas dataframe
    with h5py.File(fp, mode='r') as h5fd:
        try:
            data_grp = h5fd['entry/data']
        except KeyError:
            print("Skipped bad file:", str(fp))
            continue
        keys = list(data_grp.keys())
        data = {key: data_grp[key][()] for key in keys}
        df = pd.DataFrame(data)
        # Save file to CSV
        csv_fp = f"{fp.stem}.csv"
        df.to_csv(csv_fp, sep="\t")