Mark Wolfman canismarko
canismarko
/ ipython.py
Created
May 22, 2024 17:05
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| In [1]: from haven.instrument.xray_source import PlanarUndulator | |
| In [2]: from ophyd import sim | |
| In [3]: undulator = sim.instantiate_fake_device(PlanarUndulator) | |
| --------------------------------------------------------------------------- | |
| KeyError Traceback (most recent call last) | |
| File /home/beams1/B268176/miniforge3/envs/haven/lib/python3.9/site-packages/ophyd/device.py:325, in Component.__get__(self, instance, owner) | |
| 324 try: | |
| --> 325 return instance._signals[self.attr] |
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| Starting 20bmb | |
| # Linux startup script | |
| < envPaths | |
| epicsEnvSet("IOC","ioc20bmb") | |
| epicsEnvSet("TOP","/net/s20data/xorApps/epics/synApps_6_3/ioc/20bmb") | |
| epicsEnvSet("SUPPORT","/APSshare/epics/synApps_6_3/support") | |
| epicsEnvSet("EPICS_BASE","/APSshare/epics/base-7.0.8") | |
| epicsEnvSet("ALIVE","/APSshare/epics/synApps_6_3/support/alive-R1-4-1") | |
| epicsEnvSet("AREA_DETECTOR","/APSshare/epics/synApps_6_3/support/areaDetector-R3-12-1") | |
| epicsEnvSet("ASYN","/APSshare/epics/synApps_6_3/support/asyn-R4-44-2") |
canismarko
/ async_decorator.ipynb
Created
February 13, 2024 21:13
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| import numpy as np | |
| import pandas as pd | |
| from tiled.adapters.mapping import MapAdapter | |
| from tiled.adapters.xarray import DatasetAdapter | |
| from tiled.client import Context, from_context | |
| from tiled.server.app import build_app | |
| # Tiled data to use for testing | |
| # Some mocked test data |
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| diff --git a/dungeonsheets/character.py b/dungeonsheets/character.py | |
| index 0e88c81..8c84232 100644 | |
| --- a/dungeonsheets/character.py | |
| +++ b/dungeonsheets/character.py | |
| @@ -196,7 +196,7 @@ class Character(Creature): | |
| self.portrait = attrs.pop("portrait", None) | |
| if self.portrait: | |
| self.images = [(self.portrait, 1, 117, 551, 170, 220)] + self.images | |
| - self.source_file_location = attrs.pop("source_file_location") | |
| + self.source_file_location = attrs.pop("source_file_location", "") |
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| import pandas as pd | |
| import h5py | |
| from pathlib import Path | |
| from tqdm import tqdm | |
| target_dir = Path("./") | |
| for fp in tqdm(list(target_dir.iterdir())): | |
| if fp.suffix != ".hdf": | |
| continue |
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| Exception in thread Thread-21: | |
| Traceback (most recent call last): | |
| File "/local/usertxm/conda/anaconda/lib/python3.8/site-packages/tomoscan-0.1-py3.8.egg/tomoscan/tomoscan.py", line 668, in fly_scan | |
| self.begin_scan() | |
| File "/local/usertxm/conda/anaconda/lib/python3.8/site-packages/tomoscan-0.1-py3.8.egg/tomoscan/tomoscan_32id.py", line 211, in begin_scan | |
| super().begin_scan() | |
| File "/local/usertxm/conda/anaconda/lib/python3.8/site-packages/tomoscan-0.1-py3.8.egg/tomoscan/tomoscan_pso.py", line 97, in begin_scan | |
| self.compute_positions_PSO() | |
| File "/local/usertxm/conda/anaconda/lib/python3.8/site-packages/tomoscan-0.1-py3.8.egg/tomoscan/tomoscan_pso.py", line 291, in compute_positions_PSO | |
| time_per_angle = self.compute_frame_time() |
canismarko
/ CTSegNet_SavedModel_Output
Created
April 20, 2020 18:02
First attempt at using CTSegNet
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| (tomo) ✘ mwolf@mal ~/src/CTSegNet master ● python bin/run_segmenter_hdf5.py -c cfg_files/setup_seg_hdf5.cfg | |
| ############################################################ | |
| Welcome to CTSegNet: AI-based 3D Segmentation | |
| ############################################################ | |
| Dataset shape: (899, 940, 2124) | |
| Dataset size: 7.18 GB |
canismarko
/ git log --graphy --decorate --pretty=oneline --all
Last active
April 16, 2020 17:34
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| * 7f97348f122768e391bcbf70f78c3d04961f4fcd (upstream/master) Merge pull request #46 from aps-7bm/master | |
| |\ | |
| | * 7eb98bd11afb04f5285eff9511fa144a9fc89257 (origin/master, origin/HEAD) Merge remote-tracking branch 'upstream/master' | |
| | |\ | |
| | |/ | |
| |/| | |
| * | 8cb16b3d2b728e0fd0f91127bb2a4d0f0ca76632 Update README.rst | |
| * | 274b675608196b6992b5b523894f7e89974ecc38 Merge pull request #44 from decarlof/master | |
| |\ \ | |
| | * | 65a7b7d771c75e3af6dd9317461e73c49285c7ab fix auto-mock |
canismarko
/ gist:be0b5d0f4766eb0b603ca6b599271ea5
Created
September 13, 2019 19:58
Rotation_Center_Astra_MWE
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| # ----------------------------------------------------------------------- | |
| # Copyright: 2010-2018, imec Vision Lab, University of Antwerp | |
| # 2013-2018, CWI, Amsterdam | |
| # | |
| # Contact: astra@astra-toolbox.com | |
| # Website: http://www.astra-toolbox.com/ | |
| # | |
| # This file is part of the ASTRA Toolbox. | |
| # | |
| # |
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