Skip to content

Instantly share code, notes, and snippets.

@cfljam
Last active December 30, 2015 17:59
Show Gist options
  • Save cfljam/7864561 to your computer and use it in GitHub Desktop.
Save cfljam/7864561 to your computer and use it in GitHub Desktop.
parse hits in ipcress output into simple columnar form and parse this into gff
awk '/^ipcress:/, split($2,HIT,":"){print HIT[1],$3,$4,$5,$6,$7,$8,$9,$10,$11}'
awk '{print $1,"ipcress","PCR_product",$5,$8,".","+",".","Name="$2}'
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment