Last active
December 30, 2015 17:59
-
-
Save cfljam/7864561 to your computer and use it in GitHub Desktop.
parse hits in ipcress output into simple columnar form and parse this into gff
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
awk '/^ipcress:/, split($2,HIT,":"){print HIT[1],$3,$4,$5,$6,$7,$8,$9,$10,$11}' |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
awk '{print $1,"ipcress","PCR_product",$5,$8,".","+",".","Name="$2}' |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment