programs.txt

bcbio-nextgen,0.7.3
htseq,0.5.4p1
bamtools,2.2.3
bedtools,v2.17.0
bowtie2,2.0.0-beta5
bwa,0.7.5a-r405
cufflinks,v2.0.0
cutadapt,
fastqc,v0.10.1
freebayes,v0.9.9.2-14-g8e44a20-dirty
gemini,
novosort,V1.00.02
novoalign,V3.00.02
samtools,0.1.19-44428cd
tophat,v2.0.9
bcbio.variation,0.1.0
gatk,Exception in thread "main" java.lang.UnsupportedClassVersionError: org/broadinstitute/sting/gatk/CommandLineGATK : Unsupported major.minor version 51.0
  at java.lang.ClassLoader.defineClass1(Native Method)
	at java.lang.ClassLoader.defineClass(ClassLoader.java:634)
	at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
	at java.net.URLClassLoader.defineClass(URLClassLoader.java:277)
	at java.net.URLClassLoader.access$000(URLClassLoader.java:73)
	at java.net.URLClassLoader$1.run(URLClassLoader.java:212)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
Could not find the main class: org.broadinstitute.sting.gatk.CommandLineGATK. Program will exit.
mutect,
picard,1.1
rnaseqc,_v1.1.7
varscan,