Chris Gorgolewski chrisgorgo

## ds000001_model.json
[
  {
    "level": "run",
    "inputs": {
      "dependent_variable": "balloonanalogrisktask"
    },
    "transformations": [
      {
        "name": "factor",
        "input": [ "trial_type" ],

## Ngo+2017+review.ipynb

      
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## Querying+MRIQC+Web+API.ipynb

      
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## data_anaylysis.ipynb

      
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## Comparing_MRIQC_masks_Beast.ipynb

      
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## sub-01_ses-test_task-fingerfootlips_bold.html
<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="MRIQC" />
<title>MRIQC: individual bold
report</title>
<style type="text/css">
body { font-family: helvetica; }

## finding_spikes.ipynb

      
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## gist:376a683381d762f2c8b15385947b9c64
PS C:\Users\filo> docker run -v /var/run/docker.sock:/var/run/docker.sock -v /c/Users/filo/singularity:/output --privileged -t --rm filo/docker2singularity opensuse:13.1
Size: 385 MB for the singularity container
(1/9) Creating an empty image...
Creating a sparse image with a maximum size of 385MiB...
Using given image size of 385
Formatting image (/sbin/mkfs.ext3)
Done. Image can be found at: /tmp/opensuse_13.1-2015-04-30-580dd60a77f7.img
(2/9) Importing filesystem...
(3/9) Bootstrapping...
(4/9) Adding run script...

## gist:2dd2c47592423291bf16db6348d26c6a
open("/home/filo/anaconda3/lib/python3.5/site-packages/nbformat/v3/__pycache__/nbjson.cpython-35.pyc", O_RDONLY) = 5
fcntl(5, F_GETFD)                       = 0
fcntl(5, F_SETFD, FD_CLOEXEC)           = 0
fstat(5, {st_mode=S_IFREG|0664, st_size=2180, ...}) = 0
lseek(5, 0, SEEK_CUR)                   = 0
fstat(5, {st_mode=S_IFREG|0664, st_size=2180, ...}) = 0
read(5, "\26\r\r\n\3103\30V\372\5\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\4\0\0\0@\0\0"..., 2181) = 2180
read(5, 0x101f244, 1)                   = 0
close(5)                                = 0
stat("/home/filo/anaconda3/lib/python3.5/site-packages/nbformat/v3", {st_mode=S_IFDIR|0777, st_size=0, ...}) = 0

## circle.yml
## Customize dependencies
dependencies:
  pre:
    - sudo apt-get update && sudo apt-get -y install r-base
## Customize test commands
test:
  override:
    - Rscript demean_age.R
	[
	{
	"level": "run",
	"inputs": {
	"dependent_variable": "balloonanalogrisktask"
	},
	"transformations": [
	{
	"name": "factor",
	"input": [ "trial_type" ],
	<?xml version="1.0" encoding="utf-8" ?>
	<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
	<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
	<head>
	<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
	<meta name="generator" content="MRIQC" />
	<title>MRIQC: individual bold
	report</title>
	<style type="text/css">
	body { font-family: helvetica; }
	PS C:\Users\filo> docker run -v /var/run/docker.sock:/var/run/docker.sock -v /c/Users/filo/singularity:/output --privileged -t --rm filo/docker2singularity opensuse:13.1
	Size: 385 MB for the singularity container
	(1/9) Creating an empty image...
	Creating a sparse image with a maximum size of 385MiB...
	Using given image size of 385
	Formatting image (/sbin/mkfs.ext3)
	Done. Image can be found at: /tmp/opensuse_13.1-2015-04-30-580dd60a77f7.img
	(2/9) Importing filesystem...
	(3/9) Bootstrapping...
	(4/9) Adding run script...
	open("/home/filo/anaconda3/lib/python3.5/site-packages/nbformat/v3/__pycache__/nbjson.cpython-35.pyc", O_RDONLY) = 5
	fcntl(5, F_GETFD) = 0
	fcntl(5, F_SETFD, FD_CLOEXEC) = 0
	fstat(5, {st_mode=S_IFREG\|0664, st_size=2180, ...}) = 0
	lseek(5, 0, SEEK_CUR) = 0
	fstat(5, {st_mode=S_IFREG\|0664, st_size=2180, ...}) = 0
	read(5, "\26\r\r\n\3103\30V\372\5\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\4\0\0\0@\0\0"..., 2181) = 2180
	read(5, 0x101f244, 1) = 0
	close(5) = 0
	stat("/home/filo/anaconda3/lib/python3.5/site-packages/nbformat/v3", {st_mode=S_IFDIR\|0777, st_size=0, ...}) = 0
	## Customize dependencies
	dependencies:
	pre:
	- sudo apt-get update && sudo apt-get -y install r-base
	## Customize test commands
	test:
	override:
	- Rscript demean_age.R