| <!DOCTYPE html> | |
| <head><meta charset="UTF-8"></head> | |
| <body> | |
| <form id="form1"> | |
| <select name="question1"> | |
| <option value="value1">Value 1</option> | |
| <option value="value2" selected>Value 2</option> | |
| <option value="value3">Value 3</option> | |
| </select> |
| -- incomplete markdown to latex handout custom writer... | |
| -- to create a report, run | |
| -- $ pandoc -t ~/bin/report.lua | pdflatex | |
| -- still a work in progress... many of the functions are still in the HTML form from the example Pandoc spits out, and also | |
| -- example markdown: | |
| -- # this is a title | |
| -- | |
| -- {#fig:one width=4in caption=side} |
| """ | |
| markdown --> pandoc --> latex --> pdf builder script | |
| features: | |
| - checkes for changes in the current working directory | |
| - stores change data between runs in this file itself (at the bottom) | |
| - will only rebuild and rerun those parts that need to be rebuilt | |
| - will run `pdflatex` only as many times as necessary | |
| - for every `.md` file in the cwd it will run pandoc and produce a so-named `.tex` latex file | |
| - if any `.tex` file changes then pdflatex is run |
BCL Files are base call and quality score binary files containing a (base,quality) pair for successive clusters. The file is structured as followed: Bytes 1-4 : unsigned int numClusters Bytes 5-numClusters + 5 : 1 byte base/quality score
The base/quality scores are organized as follows (with one exception, SEE BELOW):
| <!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset=utf-8 /> | |
| <title>Video.js Example Embed</title> | |
| <link href="http://vjs.zencdn.net/5.3.0/video-js.css" rel="stylesheet"> | |
| <script src="http://vjs.zencdn.net/5.3.0/video.js"></script> | |
| </head> |
| [section: small, fun, #1] | |
| # this is a section | |
| <section class="small fun" id="1"> | |
| <h1>this is a seciont</h1> | |
| <head> | |
| <meta name=""> | |
| </head> |
| https://github.com/crmackay/cosaco/issues/new?title=foo&body=bar&labels=enhancement |
| //I'm learning about bitwise flags and bitwise math (|, ^=, |=, etc) in golang... | |
| //http://play.golang.org/p/QTJZJaOjZc | |
| package main | |
| import "fmt" | |
| const ( | |
| one = 1 << iota // 1 = 0000 0001 | |
| two // 2 = 0000 0010 |
| #!/usr/bin/env python | |
| import os | |
| # | |
| #BSUB -W 00:10 | |
| #BSUB -q regular | |
| #BSUB -n 12 | |
| #BSUB -J myjob.py | |
| #BSUB -P project_code | |
| #BSUB -oo output |
| import os | |
| #path to direcory containing file | |
| path = os.path.dirname(os.path.abspath(__file__)) | |
| # path to containing directory | |
| path_above = os.path.split(path)[0] |