cthoyt

import bioregistry


def main():
    """Identify resources with uncurated bananas."""
    for resource in bioregistry.resources():
        pattern = resource.get_pattern()
        if not pattern:
            continue
        for peel in ":_-":

cthoyt

"""Get Journal of Cheminformatics DOIs."""

import requests
import pystow

MODULE = pystow.module("jcheminf", "volumes")
USER = "egonw"  # alternative use first-party jcheminform if it ever gets updated
REPO = "jcheminform-kb"
BRANCH = "main"
PREFIX = "https://doi.org/10.1186/"

cthoyt

"""Update the dependencies."""

import json
from pathlib import Path
from typing import Iterable, Optional

import bioontologies
import bioregistry
import click
from bioontologies.obograph import Graph

cthoyt

"""Generate author list text from a Google Sheet."""

from operator import itemgetter

import click
import pandas as pd

ROLE = {"Lead": 0, "Senior": 2}

SUPERSCRIPTS = {

cthoyt

cthoyt

cthoyt

"""Calculate the number of possible mappings between bioregistry entries."""

from itertools import combinations

from bioregistry.external.getters import GETTERS
from bioregistry.version import VERSION
from humanize import intword


def main():

cthoyt

#defaultView:Graph

SELECT ?s ?sLabel ?rgb ?edgelabel ?o ?oLabel
WHERE {
  {
    SELECT ?s ?sLabel ?rgb ?o ?oLabel
    WHERE {
      ?o wdt:P50 wd:Q47475003, ?s .
      FILTER (?s != wd:Q47475003)
      OPTIONAL {

cthoyt

cthoyt

from pathlib import Path

import pandas as pd

import pybiopax

ALL_PATHWAYS = "https://reactome.org/download/current/ReactomePathways.txt"


def download_reactome(directory):