Command Line Tools from Apple- InstalledSublime Text 2- subl has been symlink and worksGituse systems; can update using brew if needed in subsequent clonesHomebrew - Watch the changes- raring to brewiTerm2 / oh-my-zsh- Need to test the plugins
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# First install tmux | |
brew install tmux | |
# For mouse support (for switching panes and windows) | |
# Only needed if you are using Terminal.app (iTerm has mouse support) | |
Install http://www.culater.net/software/SIMBL/SIMBL.php | |
Then install https://bitheap.org/mouseterm/ | |
# More on mouse support http://floriancrouzat.net/2010/07/run-tmux-with-mouse-support-in-mac-os-x-terminal-app/ |
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## reproduce the figures from http://www.jstatsoft.org/v28/c01/paper using ggplot2 | |
library(ggplot2) | |
## parameters | |
set.seed(2710) | |
## Figure 1 | |
d <- rnorm(50) |
SAM and BAM filtering one-liners
@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/
Please extend with additional/faster/better solutions via a pull request!
BWA mapping (using piping for minimal disk I/O)