Deren Eaton dereneaton

## gist:47d7555130d0be516ef0
{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [

## testing.ipynb

      
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                dereneaton
                / testing.ipynb
            
            
              Created
              April 28, 2015 19:20
            
              
                pyrad data types testing
              
          
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## testing_cat.ipynb

      
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              August 29, 2015 14:20
            
              
                raxml snpfreq calls
              
          
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## cyatho_notebook.ipynb

      
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              August 29, 2015 14:13
            
              
                Cyatho locus sharing
              
          
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## clusthist.py
## import libraries
import glob
import gzip

## read in clust files (enter your data location here)
clustfiles = glob.glob("clust.85/*.clustS.gz")

## create a location to write results to
outfile = open("depthstats.txt", 'w')

## Carex.ipynb

      
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              August 29, 2015 14:01
            
              
                ** PERMALINKED **
              
          
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## pyRAD_v.2.0.ipynb

      
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## tutorial_ddRAD_3.0.4.ipynb

      
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## tutorial_GBS_2.16.ipynb

      
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## PE-GBS_empirical.ipynb

      
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              April 16, 2018 21:04
            
              
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	{
	"cells": [
	{
	"cell_type": "code",
	"execution_count": 1,
	"metadata": {
	"collapsed": true
	},
	"outputs": [],
	"source": [
	## import libraries
	import glob
	import gzip

	## read in clust files (enter your data location here)
	clustfiles = glob.glob("clust.85/*.clustS.gz")

	## create a location to write results to
	outfile = open("depthstats.txt", 'w')