Skip to content

Instantly share code, notes, and snippets.

@dfornika
Created February 19, 2016 20:24
Show Gist options
  • Save dfornika/d9bdee8acadba2af7119 to your computer and use it in GitHub Desktop.
Save dfornika/d9bdee8acadba2af7119 to your computer and use it in GitHub Desktop.
rstudio-server (homebrew/science/rstudio-server) on x86_64-linux - Homebrew build logs
Homebrew build logs for homebrew/science/rstudio-server on x86_64-linux
Build date: 2016-02-19 20:18:18
HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/linuxbrew.git
HEAD: 067e0dc0b20cb67c24affbed0b08ef74800b799f
Last commit: 20 hours ago
HOMEBREW_PREFIX: /data/home/dfornika/.linuxbrew
HOMEBREW_REPOSITORY: /data/home/dfornika/.linuxbrew
HOMEBREW_CELLAR: /data/home/dfornika/.linuxbrew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 32-core 64-bit sandybridge
Kernel: Linux 2.6.32-504.16.2.el6.x86_64 x86_64 GNU/Linux
OS: CentOS release 6.6 (Final)
Codename: Final
OS glibc: 2.12
OS gcc: 4.4.7
Linuxbrew glibc: 2.19
Linuxbrew gcc: 5.3.0
Clang: N/A
X11: 2.7.8 => /usr
System Ruby: 2.3.0 => /data/home/dfornika/.linuxbrew/Cellar/ruby/2.3.0/bin/ruby
Perl: /data/home/dfornika/perl5/perlbrew/perls/perl-5.23.6/bin/perl => /data/home/dfornika/perl5/perlbrew/perls/perl-5.23.6/bin/perl5.23.6
Python: /data/home/dfornika/.linuxbrew/bin/python => /data/home/dfornika/.linuxbrew/Cellar/python/2.7.11/bin/python2.7
Ruby: /data/home/dfornika/.linuxbrew/bin/ruby => /data/home/dfornika/.linuxbrew/Cellar/ruby/2.3.0/bin/ruby
Java: 1.8.0_73
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!
Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
guile18
Formula: rstudio-server
Tap: homebrew/science
Path: /data/home/dfornika/.linuxbrew/Library/Taps/homebrew/homebrew-science/rstudio-server.rb
2016-02-19 20:18:14 +0000
R
CMD
build
rsconnect
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
* checking for file 'rsconnect/DESCRIPTION' ... OK
* preparing 'rsconnect':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'rsconnect_0.4.1.11.tar.gz'
2016-02-19 20:18:14 +0000
cmake
..
-DRSTUDIO_TARGET=Server
-DCMAKE_BUILD_TYPE=Release
-DBOOST_ROOT=/data/home/dfornika/.linuxbrew/opt/boost150
-DBoost_INCLUDE_DIR=/data/home/dfornika/.linuxbrew/opt/boost150/include
-DCMAKE_INSTALL_PREFIX=/data/home/dfornika/.linuxbrew/Cellar/rstudio-server/0.99.878/rstudio
-DCMAKE_EXE_LINKER_FLAGS=-L/data/home/dfornika/.linuxbrew/opt/openssl/lib
-DCMAKE_CXX_FLAGS=-I/data/home/dfornika/.linuxbrew/opt/openssl/include
-- The C compiler identification is GNU 5.3.0
-- The CXX compiler identification is GNU 5.3.0
-- Check for working C compiler: /data/home/dfornika/.linuxbrew/bin/gcc-5
-- Check for working C compiler: /data/home/dfornika/.linuxbrew/bin/gcc-5 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /data/home/dfornika/.linuxbrew/bin/g++-5
-- Check for working CXX compiler: /data/home/dfornika/.linuxbrew/bin/g++-5 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- LSB release: centos
-- Boost version: 1.50.0
-- Found the following Boost libraries:
-- date_time
-- filesystem
-- iostreams
-- program_options
-- regex
-- signals
-- system
-- thread
-- chrono
-- Performing Test HAVE_SCANDIR_POSIX
-- Performing Test HAVE_SCANDIR_POSIX - Success
-- Looking for SA_NOCLDWAIT
-- Looking for SA_NOCLDWAIT - found
-- Looking for SO_PEERCRED
-- Looking for SO_PEERCRED - found
-- Looking for inotify_init1
-- Looking for inotify_init1 - found
-- Looking for getpeereid
-- Looking for getpeereid - not found
-- Looking for setresuid
-- Looking for setresuid - found
-- Performing Test PAM_MESSAGE_CONST
-- Performing Test PAM_MESSAGE_CONST - Success
-- Found PAM: /usr/lib64/libpam.so;/data/home/dfornika/.linuxbrew/lib64/libdl.so
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
-- Found LibR: /data/home/dfornika/.linuxbrew/Cellar/r/3.2.3/lib/R
-- Found R: /data/home/dfornika/.linuxbrew/Cellar/r/3.2.3/lib/R
-- Performing Test LIBR_MINIMUM_VERSION
-- Performing Test LIBR_MINIMUM_VERSION - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/build
2016-02-19 20:18:18 +0000
make
install
Scanning dependencies of target gwt_build
Scanning dependencies of target rstudio-core-synctex
[ 1%] Building C object src/cpp/core/tex/synctex/CMakeFiles/rstudio-core-synctex.dir/synctex_parser_utils.c.o
[ 1%] Building C object src/cpp/core/tex/synctex/CMakeFiles/rstudio-core-synctex.dir/synctex_parser.c.o
Scanning dependencies of target rstudio-core-hunspell
[ 1%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/affixmgr.cxx.o
[ 2%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/affentry.cxx.o
[ 2%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/csutil.cxx.o
[ 2%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/hashmgr.cxx.o
[ 2%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/suggestmgr.cxx.o
[ 3%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/dictmgr.cxx.o
[ 4%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/phonet.cxx.o
[ 4%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/replist.cxx.o
[ 4%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/filemgr.cxx.o
[ 5%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/hunzip.cxx.o
[ 5%] Building CXX object src/cpp/core/spelling/hunspell/CMakeFiles/rstudio-core-hunspell.dir/hunspell.cxx.o
Buildfile: /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/build.xml
ext:
[jscomp] Compiling 52 file(s) with 41 extern(s)
[ 5%] Linking C static library librstudio-core-synctex.a
[ 5%] Built target rstudio-core-synctex
Scanning dependencies of target rstudio-core
[ 5%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Assert.cpp.o
[ 5%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Backtrace.cpp.o
[ 6%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Base64.cpp.o
[ 6%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/BoostErrors.cpp.o
[ 6%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/BrowserUtils.cpp.o
[ 6%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/ConfigUtils.cpp.o
[ 7%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/DateTime.cpp.o
[ 7%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Error.cpp.o
[ 7%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Exec.cpp.o
[ 8%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/FileInfo.cpp.o
[ 8%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/FileLogWriter.cpp.o
[ 8%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/FilePath.cpp.o
[ 9%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/FileSerializer.cpp.o
[ 9%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/FileUtils.cpp.o
[ 9%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/GitGraph.cpp.o
[ 10%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Hash.cpp.o
[ 10%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/HtmlUtils.cpp.o
[ 10%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Log.cpp.o
[ 11%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/LogWriter.cpp.o
[ 11%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/PerformanceTimer.cpp.o
[ 11%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/ProgramOptions.cpp.o
[ 11%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/RegexUtils.cpp.o
[ 11%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Settings.cpp.o
[ 11%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/SafeConvert.cpp.o
[ 12%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/RecursionGuard.cpp.o
[ 13%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/StderrLogWriter.cpp.o
[ 13%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/ColorUtils.cpp.o
[ 14%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Thread.cpp.o
[ 14%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/StringUtils.cpp.o
[ 14%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/Trace.cpp.o
[ 14%] Linking CXX static library librstudio-core-hunspell.a
[jscomp] 0 error(s), 0 warning(s)
javac:
[mkdir] Created dir: /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/bin
[javac] Compiling 10 source files to /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/bin[ 14%] Built target rstudio-core-hunspell
[ 14%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/WaitUtils.cpp.o
[ 15%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/file_lock/FileLock.cpp.o
[ 15%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/file_lock/AdvisoryFileLock.cpp.o
[javac] Note: Some input files use or override a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Compiling 1765 source files to /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/bin
[ 15%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/file_lock/LinkBasedFileLock.cpp.o
[ 16%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/gwt/GwtFileHandler.cpp.o
[ 16%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/gwt/GwtLogHandler.cpp.o
[ 16%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/gwt/GwtSymbolMaps.cpp.o
[ 17%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/CodeCompleteResults.cpp.o
[ 17%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/Cursor.cpp.o
[ 17%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/Diagnostic.cpp.o
[ 17%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/LibClang.cpp.o
[ 18%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/SourceIndex.cpp.o
[ 18%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/SourceLocation.cpp.o
[ 18%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/SourceRange.cpp.o
[ 19%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/Token.cpp.o
[ 19%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/TranslationUnit.cpp.o
[ 19%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/UnsavedFiles.cpp.o
[ 20%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/libclang/Utils.cpp.o
[ 20%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/json/JsonRpc.cpp.o
[ 20%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/json/Json.cpp.o
[ 21%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/json/spirit/json_spirit_reader.cpp.o
[ 21%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/json/spirit/json_spirit_value.cpp.o
[ 21%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/json/spirit/json_spirit_writer.cpp.o
[ 22%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/Header.cpp.o
[ 22%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/Cookie.cpp.o
[ 22%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/Message.cpp.o
[ 23%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/MultipartRelated.cpp.o
[ 23%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/Request.cpp.o
[ 23%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/RequestParser.cpp.o
[ 23%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/Response.cpp.o
[ 24%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/SocketProxy.cpp.o
[ 24%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/URL.cpp.o
[ 24%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/UriHandler.cpp.o
[ 25%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/http/Util.cpp.o
[ 25%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/Markdown.cpp.o
[ 25%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/MathJax.cpp.o
[ 26%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/autolink.c.o
[ 26%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/buffer.c.o
[ 26%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/houdini_href_e.c.o
[ 27%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/html.c.o
[ 27%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/houdini_html_e.c.o
[ 27%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/html_smartypants.c.o
[ 28%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/markdown.c.o
[ 28%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RActiveSessions.cpp.o
[ 28%] Building C object src/cpp/core/CMakeFiles/rstudio-core.dir/markdown/sundown/stack.c.o
[ 29%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RPackageInfo.cpp.o
[ 29%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RProjectFile.cpp.o
[ 29%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RSessionContext.cpp.o
/tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/cpp/core/file_lock/LinkBasedFileLock.cpp: In function 'rstudio::core::Error rstudio::core::{anonymous}::writeLockFile(const rstudio::core::FilePath&)':
/tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/cpp/core/file_lock/LinkBasedFileLock.cpp:207:55: warning: ignoring return value of 'int link(const char*, const char*)', declared with attribute warn_unused_result [-Wunused-result]
lockFilePath.absolutePathNative().c_str());
^
[ 29%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RTokenizer.cpp.o
[ 30%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RSourceIndex.cpp.o
[ 30%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RTokenizerTests.cpp.o
[ 30%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RUserData.cpp.o
[ 31%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/spelling/HunspellCustomDictionaries.cpp.o
[ 31%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/spelling/HunspellDictionaryManager.cpp.o
[ 31%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/spelling/HunspellSpellingEngine.cpp.o
[ 32%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/Environment.cpp.o
[ 32%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/Process.cpp.o
[ 32%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/ShellUtils.cpp.o
[ 33%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/System.cpp.o
[ 33%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/file_monitor/FileMonitor.cpp.o
[ 33%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/tex/TexLogParser.cpp.o
[ 34%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/tex/TexMagicComment.cpp.o
[ 34%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/tex/TexSynctex.cpp.o
[ 34%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/text/DcfParser.cpp.o
[ 35%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/text/TemplateFilter.cpp.o
[ 35%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/PosixStringUtils.cpp.o
[ 35%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/REnvironmentPosix.cpp.o
[ 35%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RSessionLaunchProfile.cpp.o
[ 36%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/r_util/RVersionsPosix.cpp.o
[ 36%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/SyslogLogWriter.cpp.o
[ 36%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixChildProcessTracker.cpp.o
[copy] Copying 834 files to /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/bin
[ 37%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixEnvironment.cpp.o
gwtc:
[ 37%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixFileScanner.cpp.o
[ 37%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixLibraryLoader.cpp.o
[ 38%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixNfs.cpp.o
[ 38%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixParentProcessMonitor.cpp.o
[ 38%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixOutputCapture.cpp.o
[ 39%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixSched.cpp.o
[ 39%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixShellUtils.cpp.o
[ 39%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixSystem.cpp.o
[ 40%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixUser.cpp.o
[ 40%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixChildProcess.cpp.o
[ 40%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/PosixCrypto.cpp.o
[ 41%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/Pam.cpp.o
[ 41%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/file_monitor/LinuxFileMonitor.cpp.o
[ 41%] Building CXX object src/cpp/core/CMakeFiles/rstudio-core.dir/system/recycle_bin/LinuxRecycleBin.cpp.o
[java] Compiling module org.rstudio.studio.RStudio
/tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/cpp/core/system/PosixParentProcessMonitor.cpp: In function 'void rstudio::core::parent_process_monitor::{anonymous}::exitHandler()':
/tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/cpp/core/system/PosixParentProcessMonitor.cpp:56:46: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
::write(s_writeOnExit.at(i), "done", 4);
^
[ 41%] Linking CXX static library librstudio-core.a
[ 41%] Built target rstudio-core
Scanning dependencies of target rserver-pam
[ 41%] Building CXX object src/cpp/server/pam/CMakeFiles/rserver-pam.dir/PamMain.cpp.o
Scanning dependencies of target rstudio-session-workers
[ 41%] Building CXX object src/cpp/session/workers/CMakeFiles/rstudio-session-workers.dir/SessionWebRequestWorker.cpp.o
Scanning dependencies of target rpostback
[ 41%] Building CXX object src/cpp/session/postback/CMakeFiles/rpostback.dir/PostbackMain.cpp.o
[ 41%] Building CXX object src/cpp/session/postback/CMakeFiles/rpostback.dir/PostbackOptions.cpp.o
Scanning dependencies of target rstudio-monitor
[ 42%] Building CXX object src/cpp/monitor/CMakeFiles/rstudio-monitor.dir/audit/ConsoleAction.cpp.o
[ 42%] Building CXX object src/cpp/monitor/CMakeFiles/rstudio-monitor.dir/events/Event.cpp.o
[ 42%] Building CXX object src/cpp/monitor/CMakeFiles/rstudio-monitor.dir/metrics/Metric.cpp.o
[ 42%] Building CXX object src/cpp/monitor/CMakeFiles/rstudio-monitor.dir/MonitorClient.cpp.o
[ 43%] Building CXX object src/cpp/monitor/CMakeFiles/rstudio-monitor.dir/MonitorClientOverlay.cpp.o
Scanning dependencies of target rstudio-r
[ 43%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RErrorCategory.cpp.o
[ 44%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RExec.cpp.o
[ 44%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RFunctionHook.cpp.o
[ 44%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RJson.cpp.o
[ 45%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RJsonRpc.cpp.o
[ 45%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/ROptions.cpp.o
[ 45%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RRoutines.cpp.o
[ 46%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RSexp.cpp.o
[ 46%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RSourceManager.cpp.o
[ 46%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/RUtil.cpp.o
[ 47%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RClientMetrics.cpp.o
[ 47%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RClientState.cpp.o
[ 47%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RConsoleActions.cpp.o
[ 48%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RConsoleHistory.cpp.o
[ 48%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RDiscovery.cpp.o
[ 48%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RRestartContext.cpp.o
[ 48%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RSearchPath.cpp.o
[ 49%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RSessionState.cpp.o
[ 49%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/RSession.cpp.o
[ 49%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsPlot.cpp.o
[ 50%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsErrorCategory.cpp.o
[ 50%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsDevice.cpp.o
[ 50%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsPlotManipulator.cpp.o
[ 51%] Linking CXX static library librstudio-session-workers.a
[ 51%] Built target rstudio-session-workers
[ 52%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsPlotManipulatorManager.cpp.o
[ 53%] Linking CXX executable rserver-pam
[ 53%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsPlotManager.cpp.o
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lpam
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_date_time
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_filesystem
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_iostreams
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_program_options
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_regex
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_signals
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_system
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_thread
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_chrono
collect2: error: ld returned 1 exit status
src/cpp/server/pam/CMakeFiles/rserver-pam.dir/build.make:115: recipe for target 'src/cpp/server/pam/rserver-pam' failed
make[2]: *** [src/cpp/server/pam/rserver-pam] Error 1
CMakeFiles/Makefile2:704: recipe for target 'src/cpp/server/pam/CMakeFiles/rserver-pam.dir/all' failed
make[1]: *** [src/cpp/server/pam/CMakeFiles/rserver-pam.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 53%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsUtils.cpp.o
[ 54%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsDevDesc.cpp.o
[ 54%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RGraphicsHandler.cpp.o
[ 54%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/graphics/RShadowPngGraphicsHandler.cpp.o
[ 55%] Building CXX object src/cpp/r/CMakeFiles/rstudio-r.dir/session/REmbeddedPosix.cpp.o
[ 55%] Linking CXX static library librstudio-monitor.a
[ 55%] Built target rstudio-monitor
/tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/cpp/r/RSexp.cpp: In function 'rstudio::core::Error rstudio::r::sexp::extractFunctionInfo(SEXP, rstudio::core::r_util::FunctionInformation*, bool, bool)':
/tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/cpp/r/RSexp.cpp:1444:39: warning: 'defaultValues' may be used uninitialized in this function [-Wmaybe-uninitialized]
formalInfo.setDefaultValue(
^
[ 55%] Linking CXX executable rpostback
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_date_time
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_filesystem
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_iostreams
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_program_options
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_regex
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_signals
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_system
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_thread
/data/home/dfornika/.linuxbrew/bin/ld: cannot find -lboost_chrono
collect2: error: ld returned 1 exit status
src/cpp/session/postback/CMakeFiles/rpostback.dir/build.make:139: recipe for target 'src/cpp/session/postback/rpostback' failed
make[2]: *** [src/cpp/session/postback/rpostback] Error 1
CMakeFiles/Makefile2:591: recipe for target 'src/cpp/session/postback/CMakeFiles/rpostback.dir/all' failed
make[1]: *** [src/cpp/session/postback/CMakeFiles/rpostback.dir/all] Error 2
[ 55%] Linking CXX static library librstudio-r.a
[ 55%] Built target rstudio-r
[java] Compiling 4 permutations
[java] Compiling permutation 0...
[java] Process output
[java] Compiling
[java] Compiling permutation 1...
[java] Compiling
[java] Compiling permutation 2...
[java] Compiling permutation 3...
[java] Compile of permutations succeeded
[java] Compilation succeeded -- 117.001s
[java] Linking into /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/www/rstudio; Writing extras to /tmp/rstudio-server20160219-41263-1t75pkv/rstudio-0.99.878/src/gwt/extras/rstudio
[java] Link succeeded
[java] Linking succeeded -- 1.725s
build:
BUILD SUCCESSFUL
Total time: 2 minutes 24 seconds
[ 55%] Built target gwt_build
Makefile:149: recipe for target 'all' failed
make: *** [all] Error 2
HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/linuxbrew.git
HEAD: 067e0dc0b20cb67c24affbed0b08ef74800b799f
Last commit: 20 hours ago
HOMEBREW_PREFIX: /data/home/dfornika/.linuxbrew
HOMEBREW_REPOSITORY: /data/home/dfornika/.linuxbrew
HOMEBREW_CELLAR: /data/home/dfornika/.linuxbrew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 32-core 64-bit sandybridge
Kernel: Linux 2.6.32-504.16.2.el6.x86_64 x86_64 GNU/Linux
OS: CentOS release 6.6 (Final)
Codename: Final
OS glibc: 2.12
OS gcc: 4.4.7
Linuxbrew glibc: 2.19
Linuxbrew gcc: 5.3.0
Clang: N/A
X11: 2.7.8 => /usr
System Ruby: 2.3.0 => /data/home/dfornika/.linuxbrew/Cellar/ruby/2.3.0/bin/ruby
Perl: /data/home/dfornika/perl5/perlbrew/perls/perl-5.23.6/bin/perl => /data/home/dfornika/perl5/perlbrew/perls/perl-5.23.6/bin/perl5.23.6
Python: /data/home/dfornika/.linuxbrew/bin/python => /data/home/dfornika/.linuxbrew/Cellar/python/2.7.11/bin/python2.7
Ruby: /data/home/dfornika/.linuxbrew/bin/ruby => /data/home/dfornika/.linuxbrew/Cellar/ruby/2.3.0/bin/ruby
Java: 1.8.0_73
CC: /data/home/dfornika/.linuxbrew/bin/gcc-5 => /data/home/dfornika/.linuxbrew/Cellar/gcc/5.3.0/bin/gcc-5
CXX: /data/home/dfornika/.linuxbrew/bin/g++-5 => /data/home/dfornika/.linuxbrew/Cellar/gcc/5.3.0/bin/g++-5
OBJC: /data/home/dfornika/.linuxbrew/bin/gcc-5
OBJCXX: /data/home/dfornika/.linuxbrew/bin/g++-5
CFLAGS: -Os -w -pipe -march=core2
CXXFLAGS: -Os -w -pipe -march=core2
CPPFLAGS: -I/data/home/dfornika/.linuxbrew/opt/boost150/include -isystem/data/home/dfornika/.linuxbrew/include
LDFLAGS: -L/data/home/dfornika/.linuxbrew/opt/boost150/lib -L/data/home/dfornika/.linuxbrew/lib -Wl,--dynamic-linker=/data/home/dfornika/.linuxbrew/opt/glibc/lib/ld-linux-x86-64.so.2 -Wl,-rpath,/data/home/dfornika/.linuxbrew/lib
MAKEFLAGS: -j32
CMAKE_PREFIX_PATH: /data/home/dfornika/.linuxbrew/opt/boost150:/data/home/dfornika/.linuxbrew
PKG_CONFIG_LIBDIR: /data/home/dfornika/.linuxbrew/lib/pkgconfig
PATH: /data/home/dfornika/.linuxbrew/bin:.:/data/home/dfornika/bin:/data/home/dfornika/.linuxbrew/bin:/data/home/dfornika/.linuxbrew/sbin:/data/home/dfornika/perl5/perlbrew/bin:/data/home/dfornika/perl5/perlbrew/perls/perl-5.23.6/bin:/data/home/dfornika/perl5/bin:/data/software/local/devtoolset-1.1/root/usr/bin:/data/software/biofx/bin:/opt/sge/bin:/opt/sge/bin/lx-amd64:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lib64/openmpi/bin:/data/home/dfornika/.linuxbrew/Library/ENV/scm
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment