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dhimmel/gwas-association-downloaded_2016-04-10-Educational attainment.tsv

Created April 10, 2016 22:56
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GWAS Catalog associations for "Educational attainment" with p ≤ 5e-8
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gwas-association-downloaded_2016-04-10-Educational attainment.tsv
DATE ADDED TO CATALOG PUBMEDID FIRST AUTHOR DATE JOURNAL LINK STUDY DISEASE/TRAIT INITIAL SAMPLE SIZE REPLICATION SAMPLE SIZE REGION CHR_ID CHR_POS REPORTED GENE(S) MAPPED_GENE UPSTREAM_GENE_ID DOWNSTREAM_GENE_ID SNP_GENE_IDS UPSTREAM_GENE_DISTANCE DOWNSTREAM_GENE_DISTANCE STRONGEST SNP-RISK ALLELE SNPS MERGED SNP_ID_CURRENT CONTEXT INTERGENIC RISK ALLELE FREQUENCY P-VALUE PVALUE_MLOG P-VALUE (TEXT) OR or BETA 95% CI (TEXT) PLATFORM [SNPS PASSING QC] CNV
2013-12-01 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 126,559 European ancestry individuals NA 2q37.2 2 236149500 GBX2 AGAP1 - LOC105373944 116987 105373944 17700 11866 rs11687170-T rs11687170 11687170 downstream_gene_variant 0 0.770 3.0000000000000004E-8 7.522878745280337 (Edu Years) 0.107 [NR]unit increase Illumina, Affymetrix, Perlegen [up to 2,321,8963] (imputed) N
2013-12-01 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 126,559 European ancestry individuals NA 2q24.2 2 161236129 TANK LOC101929512, TANK 101929512, 10010 rs7309-A rs7309 7309 3_prime_UTR_variant 0 0.476 4.0E-8 7.3979400086720375 (Edu Years) 0.088 [NR]unit decrease Illumina, Affymetrix, Perlegen [up to 2,321,8963] (imputed) N
2013-12-01 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 126,559 European ancestry individuals NA 2q37.2 2 236196875 LOC100128572 ASB18 401036 rs13401104-? rs13401104 13401104 intron_variant 0 0.82 5.0E-9 8.301029995663981 (College) 1.1 [NR] Illumina, Affymetrix, Perlegen [up to 2,321,8963] (imputed) N
2013-11-29 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 101,069 European ancestry individuals 25,490 European ancestry individuals 6q16.1 6 98136857 LOC100129158 LOC101927335 101927335 rs9320913-A rs9320913 9320913 intron_variant 0 0.483 4.0E-10 9.397940008672037 (Edu Years) 0.101 [NR]unit increase Illumina, Affymetrix, Perlegen [up to 2,309,290] (imputed) N
2013-11-29 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 101,069 European ancestry individuals 25,490 European ancestry individuals 1q32.1 1 204607855 LRRN2 LOC105371692 105371692 rs11584700-? rs11584700 11584700 intron_variant 0 0.22 8.0E-12 11.096910013008056 (College) 1.09 [NR] Illumina, Affymetrix, Perlegen [up to 2,309,290] (imputed) N
2013-11-29 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 101,069 European ancestry individuals 25,490 European ancestry individuals 2q11.2 2 100202017 LOC150577 AFF3 - LINC01104 3899 150577 59434 6237 rs4851266-T rs4851266 4851266 intergenic_variant 0 0.396 4.9999999999999995E-11 10.301029995663981 (College) 1.05 [NR] Illumina, Affymetrix, Perlegen [up to 2,309,290] (imputed) N
2015-05-08 25201988 Rietveld CA 2014-09-08 Proc Natl Acad Sci U S A www.ncbi.nlm.nih.gov/pubmed/25201988 Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. Educational attainment 106,736 European ancestry individuals NA 6q16.1 6 98106018 POU3F2 LOC101927335 101927335 rs1487441-A rs1487441 1487441 intron_variant 0 0.473 2.0E-9 8.698970004336019 0.026 [NR]unit increase Affymetrix & Illumina [NR] (imputed) N
2015-05-08 25201988 Rietveld CA 2014-09-08 Proc Natl Acad Sci U S A www.ncbi.nlm.nih.gov/pubmed/25201988 Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. Educational attainment 106,736 European ancestry individuals NA 2q11.2 2 100190052 intergenic AFF3 - LINC01104 3899 150577 47469 18202 rs6712515-T rs6712515 6712515 intergenic_variant 0 0.471 2.0E-9 8.698970004336019 0.026 [NR]unit decrease Affymetrix & Illumina [NR] (imputed) N
2015-05-08 25201988 Rietveld CA 2014-09-08 Proc Natl Acad Sci U S A www.ncbi.nlm.nih.gov/pubmed/25201988 Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. Educational attainment 106,736 European ancestry individuals NA 3p21.31 3 49694428 intergenic RNF123 63891 rs9858213-T rs9858213 9858213 intron_variant 0 0.288 5.0E-9 8.301029995663981 0.028 [NR]unit increase Affymetrix & Illumina [NR] (imputed) N
2015-05-08 25201988 Rietveld CA 2014-09-08 Proc Natl Acad Sci U S A www.ncbi.nlm.nih.gov/pubmed/25201988 Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. Educational attainment 106,736 European ancestry individuals NA 2q37.2 2 236196875 intergenic ASB18 401036 rs13401104-A rs13401104 13401104 intron_variant 0 0.176 3.0000000000000004E-8 7.522878745280337 0.032 [NR]unit decrease Affymetrix & Illumina [NR] (imputed) N
2015-05-08 25201988 Rietveld CA 2014-09-08 Proc Natl Acad Sci U S A www.ncbi.nlm.nih.gov/pubmed/25201988 Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. Educational attainment 106,736 European ancestry individuals NA 1q32.1 1 204619973 intergenic LOC105371692, LRRN2 105371692, 10446 rs3789044-A rs3789044 3789044 missense_variant 0 0.219 5.0E-8 7.301029995663981 0.028 [NR]unit increase Affymetrix & Illumina [NR] (imputed) N
2013-12-01 23722424 Rietveld CA 2013-05-30 Science www.ncbi.nlm.nih.gov/pubmed/23722424 GWAS of 126,559 individuals identifies genetic variants associated with educational attainment. Educational attainment up to 126,559 European ancestry individuals NA 6p22.2 6 26510336 BTN1A1 BTN1A1 696 rs1056667-T rs1056667 1056667 3_prime_UTR_variant 0 0.538 2.0E-8 7.698970004336019 (Edu Years) 0.093 [NR]unit increase Illumina, Affymetrix, Perlegen [up to 2,321,8963] (imputed) N
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dhimmel commented Apr 10, 2016

For each association, I took the reported gene unless intergenic in which case I took the first mapped gene. This resulted in the following gene list: GBX2, TANK, LOC100128572, LOC100129158, LRRN2, LOC150577, POU3F2, AFF3, RNF123, LOC105371692, BTN1A1.

Using 23andme's genome view comparing me and my maternal grand mother, I superimposed the location of these genes:

educational attainment associations

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