Dina dinovski

## style_guide.md

      
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                scottfrazer
                / style_guide.md
            
            
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              May 18, 2023 17:37
            
              
                WDL Best Practices / Style Guide
              
          
    "My First WDL" Template

task name {
  String in
  command {
    echo '${in}'
  }
  output {
 String out = read_string(stdout())


## counts_to_tpm.R
#' Convert counts to transcripts per million (TPM).
#'
#' Convert a numeric matrix of features (rows) and conditions (columns) with
#' raw feature counts to transcripts per million.
#'
#'    Lior Pachter. Models for transcript quantification from RNA-Seq.
#'    arXiv:1104.3889v2
#'
#'    Wagner, et al. Measurement of mRNA abundance using RNA-seq data:
#'    RPKM measure is inconsistent among samples. Theory Biosci. 24 July 2012.

## README.md

      
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                tmcw
                / README.md
            
            
              Created
              February 18, 2013 13:46
            
          
    Extracted from simple-statistics.
	#' Convert counts to transcripts per million (TPM).
	#'
	#' Convert a numeric matrix of features (rows) and conditions (columns) with
	#' raw feature counts to transcripts per million.
	#'
	#' Lior Pachter. Models for transcript quantification from RNA-Seq.
	#' arXiv:1104.3889v2
	#'
	#' Wagner, et al. Measurement of mRNA abundance using RNA-seq data:
	#' RPKM measure is inconsistent among samples. Theory Biosci. 24 July 2012.