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Feature | cdhR-rep1 | cdhR-rep2 | GppX-rep1 | GppX-rep2 | luxS-rep1 | luxS-rep2 | luxS-rep3 | wt-rep1 | wt-rep2 | wt-rep3 | Length | gene | product | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PG_0001 | 491 | 258 | 198 | 442 | 480 | 737 | 651 | 336 | 633 | 286 | 1422 | dnaA | chromosomal replication initiator protein DnaA | |
PG_0002 | 69 | 54 | 45 | 86 | 84 | 72 | 119 | 92 | 94 | 63 | 573 | hexapeptide transferase family protein | ||
PG_0003 | 107 | 45 | 54 | 62 | 47 | 93 | 76 | 72 | 86 | 26 | 1020 | membrane protein, putative | ||
PG_0004 | 145 | 70 | 100 | 45 | 141 | 170 | 85 | 99 | 232 | 95 | 705 | transcriptional regulator, Sir2 family | ||
PG_0005 | 276 | 172 | 104 | 233 | 189 | 475 | 277 | 181 | 269 | 115 | 1155 | conserved hypothetical protein | ||
PG_0006 | 140 | 92 | 84 | 118 | 85 | 186 | 169 | 89 | 161 | 47 | 1329 | MATE efflux family protein | ||
PG_0007 | 10 | 0 | 5 | 0 | 4 | 2 | 0 | 7 | 1 | 0 | 159 | hypothetical protein | ||
PG_0008 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 939 | ISPg5 transposase Orf2 | ||
PG_0009 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 390 | ISPg5 transposase Orf1 |
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main() | |
{ | |
float t=1; | |
while(t!=0) { | |
t+=2; | |
} | |
} |
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module Library | |
def self.leaf_paths_of(paths) | |
normalized = paths.map {|s| x=s.squeeze('/'); x+='/'} | |
leafs = normalized.reject { |x| normalized.any? { |a| x != a && a.start_with?(x) } } | |
leafs.map {|x| x.chomp('/') }.uniq | |
end | |
end |
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module FmtLogHandler | |
(fmtLogHandler | |
,logFormatter | |
) where | |
import System.Log.Logger | |
import System.Log | |
import System.Log.Handler | |
import System.IO |
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This allows you to use simple blast search from your chrome location bar. eg. type "bn AGGTTGTATAGTTTGGGGCTCT" | |
Right-click in the chrome location bar, select "Edit Search Engines" | |
Scroll to the bottom | |
- Enter a name, say "blastn" | |
- Enter a keyword, say "bn" | |
- Cut-and-paste the snippit below into the URL | |
https://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=%s&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&JOB_TITLE=&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=megaBlast&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=28&HSP_RANGE_MAX=0&MATRIX_NAME=PAM30&MATCH_SCORES=1,-2&GAPCOSTS=0 0&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=5755&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&DI_THRESH=&PSI_PSEUDOCOUNT=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=true&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&A |