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@ebolyen
ebolyen / setup
Created March 28, 2014 17:20
Running Monsoon
module load qiime
slurmit.py -ms job.txt MyJob
@ebolyen
ebolyen / example.ipynb
Created April 29, 2014 19:25
Pandas Coordinates
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@ebolyen
ebolyen / upgma.ipynb
Last active August 29, 2015 14:01
UPGMA Compare
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@ebolyen
ebolyen / skbio - fastq reading.ipynb
Created April 29, 2015 19:57
skbio - fastq reading
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@ebolyen
ebolyen / skbio - fastq reading-with-vectorized.ipynb
Created April 29, 2015 19:58
skbio - fastq reading-with-vectorized
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@ebolyen
ebolyen / UniFrac.ipynb
Created February 20, 2018 20:50
Phylograms that explain how UniFrac works
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@ebolyen
ebolyen / README.md
Last active July 29, 2019 00:41
Q2-STAMPS19

We are starting in the middle of an analysis

Let's create a place to work first:

cd ~
mkdir q2-tutorial
cd q2-tutorial

Download data from "collaborators":

@ebolyen
ebolyen / spec.json
Created February 9, 2022 23:50
Vega spec from Wed Feb 09 2022
{
"$schema": "https://vega.github.io/schema/vega/v5.json",
"background": "white",
"padding": 5,
"title": {"text": {"signal": "'Distribution of the ' + lower(x_axis) + ' of penguins by ' + lower(y_axis)"}, "anchor": "start"},
"width": {"signal": "child_width"},
"height": {"signal": "child_height"},
"data": [
{"name": "grid_store"},
{
@ebolyen
ebolyen / spec2.json
Created February 10, 2022 02:53
Vega spec from Wed Feb 09 2022
{
"$schema": "https://vega.github.io/schema/vega/v5.json",
"background": "white",
"padding": 5,
"title": {"text": {"signal": "'Distribution of the ' + lower(x_axis) + ' of penguins by ' + lower(y_axis)"}, "anchor": "start"},
"width": {"signal": "child_width"},
"height": {"signal": "child_height"},
"data": [
{"name": "grid_store"},
{
@ebolyen
ebolyen / spec.json
Last active April 27, 2022 22:40
Almost there
{
"$schema": "https://vega.github.io/schema/vega/v5.json",
"description": "A basic bar chart example, with value labels shown upon mouse hover.",
"width": 400,
"height": {"signal": "$row_height * $n_rows"},
"title": {"text": {"signal": "$title"}},
"padding": 5,
"data": [
{
"name": "table",