emetsger

esm:~/workspaces/pass/nihms-submission-etl/nihms-etl-integration (detached*)*$ mvn -X -e -Ddocker.verbose=all verify
Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426; 2017-04-03T15:39:06-04:00)
Maven home: /Users/esm/maven-3
Java version: 1.8.0_201, vendor: Oracle Corporation
Java home: /Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre
Default locale: en_US, platform encoding: UTF-8
OS name: "mac os x", version: "10.14.6", arch: "x86_64", family: "mac"
[DEBUG] Created new class realm maven.api
[DEBUG] Importing foreign packages into class realm maven.api
[DEBUG]   Imported: javax.enterprise.inject.* < plexus.core

emetsger

            <plugin>
                <groupId>io.fabric8</groupId>
                <artifactId>docker-maven-plugin</artifactId>
                <configuration>
                    <images>
                        <image>
                            <name>oa-pass/deposit-services-core:%v</name>
                        </image>
                    </images>
                </configuration>

emetsger

esm:~ $ cat Desktop/kafka-build-tail.txt 
13:54:40.961 [-client-thread | adminclient-1] TRACE [KafkaAdminClient$AdminClientRu] - adminclient-1: entering KafkaClient#poll(timeout=2)
13:54:40.961 [-client-thread | adminclient-1] TRACE [                 NetworkClient] - Found least loaded node 127.0.0.1:55383 (id: -1 rack: null)
13:54:40.961 [-client-thread | adminclient-1] DEBUG [NetworkClient$DefaultMetadataU] - Initialize connection to node -1 for sending metadata request
13:54:40.961 [-client-thread | adminclient-1] DEBUG [                 NetworkClient] - Initiating connection to node -1 at 127.0.0.1:55383.
13:54:40.962 [-client-thread | adminclient-1] DEBUG [                      Selector] - Connection with /127.0.0.1 disconnected
java.net.ConnectException: Connection refused
	at sun.nio.ch.SocketChannelImpl.checkConnect(Native Method)
	at sun.nio.ch.SocketChannelImpl.finishConnect(SocketChannelImpl.java:717)
	at org.apache.kafka.common.network.PlaintextTransportLayer.finishConnect(PlaintextTransportLayer.

emetsger

# Copyright 2015 Johns Hopkins University
# 
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# 
#   http://www.apache.org/licenses/LICENSE-2.0
# 
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an

emetsger

diff --git a/src/main/java/com/github/jasminb/jsonapi/ResourceConverter.java b/src/main/java/com/github/jasminb/jsonapi/ResourceConverter.java
index d0a7d92..d1a1323 100644
--- a/src/main/java/com/github/jasminb/jsonapi/ResourceConverter.java
+++ b/src/main/java/com/github/jasminb/jsonapi/ResourceConverter.java
@@ -457,8 +457,20 @@ public class ResourceConverter {
 
                                                if (linkNode != null && ((link = getLink(linkNode)) != null)) {
                                                        if (isCollection(relationship)) {
+                                                               final JSONAPIDocument<? extends List<?>> doc =
+                                                                               readDocumentCollection(new ByteArrayInputStream(resolver.resolve(link)), type);

emetsger

@Type("nodes")
public class Node {

    // other fields

    @Id
    private String id;

    @Relationship(value = "root", resolve = true)
    private Node root;