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Created April 15, 2021 14:43
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Maven build failure
Raw
raw.log
esm:~/workspaces/pass/nihms-submission-etl/nihms-etl-integration (detached*)*$ mvn -X -e -Ddocker.verbose=all verify
Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426; 2017-04-03T15:39:06-04:00)
Maven home: /Users/esm/maven-3
Java version: 1.8.0_201, vendor: Oracle Corporation
Java home: /Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre
Default locale: en_US, platform encoding: UTF-8
OS name: "mac os x", version: "10.14.6", arch: "x86_64", family: "mac"
[DEBUG] Created new class realm maven.api
[DEBUG] Importing foreign packages into class realm maven.api
[DEBUG] Imported: javax.enterprise.inject.* < plexus.core
[DEBUG] Imported: javax.enterprise.util.* < plexus.core
[DEBUG] Imported: javax.inject.* < plexus.core
[DEBUG] Imported: org.apache.maven.* < plexus.core
[DEBUG] Imported: org.apache.maven.artifact < plexus.core
[DEBUG] Imported: org.apache.maven.classrealm < plexus.core
[DEBUG] Imported: org.apache.maven.cli < plexus.core
[DEBUG] Imported: org.apache.maven.configuration < plexus.core
[DEBUG] Imported: org.apache.maven.exception < plexus.core
[DEBUG] Imported: org.apache.maven.execution < plexus.core
[DEBUG] Imported: org.apache.maven.execution.scope < plexus.core
[DEBUG] Imported: org.apache.maven.lifecycle < plexus.core
[DEBUG] Imported: org.apache.maven.model < plexus.core
[DEBUG] Imported: org.apache.maven.monitor < plexus.core
[DEBUG] Imported: org.apache.maven.plugin < plexus.core
[DEBUG] Imported: org.apache.maven.profiles < plexus.core
[DEBUG] Imported: org.apache.maven.project < plexus.core
[DEBUG] Imported: org.apache.maven.reporting < plexus.core
[DEBUG] Imported: org.apache.maven.repository < plexus.core
[DEBUG] Imported: org.apache.maven.rtinfo < plexus.core
[DEBUG] Imported: org.apache.maven.settings < plexus.core
[DEBUG] Imported: org.apache.maven.toolchain < plexus.core
[DEBUG] Imported: org.apache.maven.usability < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.* < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.authentication < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.authorization < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.events < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.observers < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.proxy < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.repository < plexus.core
[DEBUG] Imported: org.apache.maven.wagon.resource < plexus.core
[DEBUG] Imported: org.codehaus.classworlds < plexus.core
[DEBUG] Imported: org.codehaus.plexus.* < plexus.core
[DEBUG] Imported: org.codehaus.plexus.classworlds < plexus.core
[DEBUG] Imported: org.codehaus.plexus.component < plexus.core
[DEBUG] Imported: org.codehaus.plexus.configuration < plexus.core
[DEBUG] Imported: org.codehaus.plexus.container < plexus.core
[DEBUG] Imported: org.codehaus.plexus.context < plexus.core
[DEBUG] Imported: org.codehaus.plexus.lifecycle < plexus.core
[DEBUG] Imported: org.codehaus.plexus.logging < plexus.core
[DEBUG] Imported: org.codehaus.plexus.personality < plexus.core
[DEBUG] Imported: org.codehaus.plexus.util.xml.Xpp3Dom < plexus.core
[DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParser < plexus.core
[DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParserException < plexus.core
[DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlSerializer < plexus.core
[DEBUG] Imported: org.eclipse.aether.* < plexus.core
[DEBUG] Imported: org.eclipse.aether.artifact < plexus.core
[DEBUG] Imported: org.eclipse.aether.collection < plexus.core
[DEBUG] Imported: org.eclipse.aether.deployment < plexus.core
[DEBUG] Imported: org.eclipse.aether.graph < plexus.core
[DEBUG] Imported: org.eclipse.aether.impl < plexus.core
[DEBUG] Imported: org.eclipse.aether.installation < plexus.core
[DEBUG] Imported: org.eclipse.aether.internal.impl < plexus.core
[DEBUG] Imported: org.eclipse.aether.metadata < plexus.core
[DEBUG] Imported: org.eclipse.aether.repository < plexus.core
[DEBUG] Imported: org.eclipse.aether.resolution < plexus.core
[DEBUG] Imported: org.eclipse.aether.spi < plexus.core
[DEBUG] Imported: org.eclipse.aether.transfer < plexus.core
[DEBUG] Imported: org.eclipse.aether.version < plexus.core
[DEBUG] Imported: org.fusesource.jansi.* < plexus.core
[DEBUG] Imported: org.slf4j.* < plexus.core
[DEBUG] Imported: org.slf4j.helpers.* < plexus.core
[DEBUG] Imported: org.slf4j.spi.* < plexus.core
[DEBUG] Populating class realm maven.api
[INFO] Error stacktraces are turned on.
[DEBUG] Message scheme: color
[DEBUG] Message styles: debug info warning error success failure strong mojo project
[DEBUG] Reading global settings from /Users/esm/maven-3/conf/settings.xml
[DEBUG] Reading user settings from /Users/esm/.m2/settings.xml
[DEBUG] Reading global toolchains from /Users/esm/maven-3/conf/toolchains.xml
[DEBUG] Reading user toolchains from /Users/esm/.m2/toolchains.xml
[DEBUG] Using local repository at /Users/esm/.m2/repository
[DEBUG] Using manager EnhancedLocalRepositoryManager with priority 10.0 for /Users/esm/.m2/repository
[INFO] Scanning for projects...
[DEBUG] Extension realms for project org.dataconservancy.pass:nihms-etl-integration:jar:1.4.1-SNAPSHOT: (none)
[DEBUG] Looking up lifecycle mappings for packaging jar from ClassRealm[plexus.core, parent: null]
[DEBUG] Extension realms for project org.dataconservancy.pass:pass-nihms-submission-etl:pom:1.4.1-SNAPSHOT: (none)
[DEBUG] Looking up lifecycle mappings for packaging pom from ClassRealm[plexus.core, parent: null]
[DEBUG] === REACTOR BUILD PLAN ================================================
[DEBUG] Project: org.dataconservancy.pass:nihms-etl-integration:jar:1.4.1-SNAPSHOT
[DEBUG] Tasks: [verify]
[DEBUG] Style: Regular
[DEBUG] =======================================================================
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building NIHMS ELT Integration Tests 1.4.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[DEBUG] === PROJECT BUILD PLAN ================================================
[DEBUG] Project: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT
[DEBUG] Dependencies (collect): []
[DEBUG] Dependencies (resolve): [compile, runtime, test]
[DEBUG] Repositories (dependencies): [oss.snapshots (https://oss.sonatype.org/content/repositories/snapshots, default, snapshots), central (https://repo.maven.apache.org/maven2, default, releases)]
[DEBUG] Repositories (plugins) : [central (https://repo.maven.apache.org/maven2, default, releases)]
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.codehaus.mojo:build-helper-maven-plugin:3.0.0:reserve-network-port (reserve-port)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<portNames>
<portName>FCREPO_PORT</portName>
<portName>ES_PORT</portName>
<portName>FCREPO_JMS_PORT</portName>
<portName>FCREPO_STOMP_PORT</portName>
</portNames>
<project default-value="${project}"/>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:2.6:resources (default-resources)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<buildFilters default-value="${project.build.filters}"/>
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding>
<escapeString>${maven.resources.escapeString}</escapeString>
<escapeWindowsPaths default-value="true">${maven.resources.escapeWindowsPaths}</escapeWindowsPaths>
<includeEmptyDirs default-value="false">${maven.resources.includeEmptyDirs}</includeEmptyDirs>
<outputDirectory default-value="${project.build.outputDirectory}"/>
<overwrite default-value="false">${maven.resources.overwrite}</overwrite>
<project default-value="${project}"/>
<resources default-value="${project.resources}"/>
<session default-value="${session}"/>
<supportMultiLineFiltering default-value="false">${maven.resources.supportMultiLineFiltering}</supportMultiLineFiltering>
<useBuildFilters default-value="true"/>
<useDefaultDelimiters default-value="true"/>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.6.1:compile (default-compile)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<basedir default-value="${basedir}"/>
<buildDirectory default-value="${project.build.directory}"/>
<compilePath default-value="${project.compileClasspathElements}"/>
<compileSourceRoots default-value="${project.compileSourceRoots}"/>
<compilerId default-value="javac">${maven.compiler.compilerId}</compilerId>
<compilerReuseStrategy default-value="${reuseCreated}">${maven.compiler.compilerReuseStrategy}</compilerReuseStrategy>
<compilerVersion>${maven.compiler.compilerVersion}</compilerVersion>
<debug default-value="true">${maven.compiler.debug}</debug>
<debuglevel>${maven.compiler.debuglevel}</debuglevel>
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding>
<executable>${maven.compiler.executable}</executable>
<failOnError default-value="true">${maven.compiler.failOnError}</failOnError>
<failOnWarning default-value="false">${maven.compiler.failOnWarning}</failOnWarning>
<forceJavacCompilerUse default-value="false">${maven.compiler.forceJavacCompilerUse}</forceJavacCompilerUse>
<fork default-value="false">${maven.compiler.fork}</fork>
<generatedSourcesDirectory default-value="${project.build.directory}/generated-sources/annotations"/>
<maxmem>${maven.compiler.maxmem}</maxmem>
<meminitial>${maven.compiler.meminitial}</meminitial>
<mojoExecution default-value="${mojoExecution}"/>
<optimize default-value="false">${maven.compiler.optimize}</optimize>
<outputDirectory default-value="${project.build.outputDirectory}"/>
<project default-value="${project}"/>
<projectArtifact default-value="${project.artifact}"/>
<release>${maven.compiler.release}</release>
<session default-value="${session}"/>
<showDeprecation default-value="false">${maven.compiler.showDeprecation}</showDeprecation>
<showWarnings default-value="false">${maven.compiler.showWarnings}</showWarnings>
<skipMain>${maven.main.skip}</skipMain>
<skipMultiThreadWarning default-value="false">${maven.compiler.skipMultiThreadWarning}</skipMultiThreadWarning>
<source default-value="1.5">1.8</source>
<staleMillis default-value="0">${lastModGranularityMs}</staleMillis>
<target default-value="1.5">1.8</target>
<useIncrementalCompilation default-value="true">${maven.compiler.useIncrementalCompilation}</useIncrementalCompilation>
<verbose default-value="false">${maven.compiler.verbose}</verbose>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:2.6:testResources (default-testResources)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<buildFilters default-value="${project.build.filters}"/>
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding>
<escapeString>${maven.resources.escapeString}</escapeString>
<escapeWindowsPaths default-value="true">${maven.resources.escapeWindowsPaths}</escapeWindowsPaths>
<includeEmptyDirs default-value="false">${maven.resources.includeEmptyDirs}</includeEmptyDirs>
<outputDirectory default-value="${project.build.testOutputDirectory}"/>
<overwrite default-value="false">${maven.resources.overwrite}</overwrite>
<project default-value="${project}"/>
<resources default-value="${project.testResources}"/>
<session default-value="${session}"/>
<skip>${maven.test.skip}</skip>
<supportMultiLineFiltering default-value="false">${maven.resources.supportMultiLineFiltering}</supportMultiLineFiltering>
<useBuildFilters default-value="true"/>
<useDefaultDelimiters default-value="true"/>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:3.6.1:testCompile (default-testCompile)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<basedir default-value="${basedir}"/>
<buildDirectory default-value="${project.build.directory}"/>
<compilePath default-value="${project.compileClasspathElements}"/>
<compileSourceRoots default-value="${project.testCompileSourceRoots}"/>
<compilerId default-value="javac">${maven.compiler.compilerId}</compilerId>
<compilerReuseStrategy default-value="${reuseCreated}">${maven.compiler.compilerReuseStrategy}</compilerReuseStrategy>
<compilerVersion>${maven.compiler.compilerVersion}</compilerVersion>
<debug default-value="true">${maven.compiler.debug}</debug>
<debuglevel>${maven.compiler.debuglevel}</debuglevel>
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding>
<executable>${maven.compiler.executable}</executable>
<failOnError default-value="true">${maven.compiler.failOnError}</failOnError>
<failOnWarning default-value="false">${maven.compiler.failOnWarning}</failOnWarning>
<forceJavacCompilerUse default-value="false">${maven.compiler.forceJavacCompilerUse}</forceJavacCompilerUse>
<fork default-value="false">${maven.compiler.fork}</fork>
<generatedTestSourcesDirectory default-value="${project.build.directory}/generated-test-sources/test-annotations"/>
<maxmem>${maven.compiler.maxmem}</maxmem>
<meminitial>${maven.compiler.meminitial}</meminitial>
<mojoExecution default-value="${mojoExecution}"/>
<optimize default-value="false">${maven.compiler.optimize}</optimize>
<outputDirectory default-value="${project.build.testOutputDirectory}"/>
<project default-value="${project}"/>
<release>${maven.compiler.release}</release>
<session default-value="${session}"/>
<showDeprecation default-value="false">${maven.compiler.showDeprecation}</showDeprecation>
<showWarnings default-value="false">${maven.compiler.showWarnings}</showWarnings>
<skip>${maven.test.skip}</skip>
<skipMultiThreadWarning default-value="false">${maven.compiler.skipMultiThreadWarning}</skipMultiThreadWarning>
<source default-value="1.5">1.8</source>
<staleMillis default-value="0">${lastModGranularityMs}</staleMillis>
<target default-value="1.5">1.8</target>
<testPath default-value="${project.testClasspathElements}"/>
<testRelease>${maven.compiler.testRelease}</testRelease>
<testSource>${maven.compiler.testSource}</testSource>
<testTarget>${maven.compiler.testTarget}</testTarget>
<useIncrementalCompilation default-value="true">${maven.compiler.useIncrementalCompilation}</useIncrementalCompilation>
<verbose default-value="false">${maven.compiler.verbose}</verbose>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-surefire-plugin:2.22.2:test (default-test)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<additionalClasspathElements>${maven.test.additionalClasspath}</additionalClasspathElements>
<argLine>${argLine}</argLine>
<basedir default-value="${basedir}"/>
<childDelegation default-value="false">${childDelegation}</childDelegation>
<classesDirectory default-value="${project.build.outputDirectory}"/>
<classpathDependencyExcludes>${maven.test.dependency.excludes}</classpathDependencyExcludes>
<debugForkedProcess>${maven.surefire.debug}</debugForkedProcess>
<dependenciesToScan>${dependenciesToScan}</dependenciesToScan>
<disableXmlReport default-value="false">${disableXmlReport}</disableXmlReport>
<enableAssertions default-value="true">${enableAssertions}</enableAssertions>
<encoding default-value="${project.reporting.outputEncoding}">${surefire.encoding}</encoding>
<excludedGroups>${excludedGroups}</excludedGroups>
<excludesFile>${surefire.excludesFile}</excludesFile>
<failIfNoSpecifiedTests>${surefire.failIfNoSpecifiedTests}</failIfNoSpecifiedTests>
<failIfNoTests>${failIfNoTests}</failIfNoTests>
<forkCount default-value="1">${forkCount}</forkCount>
<forkMode default-value="once">${forkMode}</forkMode>
<forkedProcessExitTimeoutInSeconds default-value="30">${surefire.exitTimeout}</forkedProcessExitTimeoutInSeconds>
<forkedProcessTimeoutInSeconds>${surefire.timeout}</forkedProcessTimeoutInSeconds>
<groups>${groups}</groups>
<includesFile>${surefire.includesFile}</includesFile>
<junitArtifactName default-value="junit:junit">${junitArtifactName}</junitArtifactName>
<junitPlatformArtifactName default-value="org.junit.platform:junit-platform-engine">${junitPlatformArtifactName}</junitPlatformArtifactName>
<jvm>${jvm}</jvm>
<localRepository default-value="${localRepository}"/>
<objectFactory>${objectFactory}</objectFactory>
<parallel>${parallel}</parallel>
<parallelMavenExecution default-value="${session.parallel}"/>
<parallelOptimized default-value="true">${parallelOptimized}</parallelOptimized>
<parallelTestsTimeoutForcedInSeconds>${surefire.parallel.forcedTimeout}</parallelTestsTimeoutForcedInSeconds>
<parallelTestsTimeoutInSeconds>${surefire.parallel.timeout}</parallelTestsTimeoutInSeconds>
<perCoreThreadCount default-value="true">${perCoreThreadCount}</perCoreThreadCount>
<pluginArtifactMap>${plugin.artifactMap}</pluginArtifactMap>
<pluginDescriptor default-value="${plugin}"/>
<printSummary default-value="true">${surefire.printSummary}</printSummary>
<projectArtifactMap>${project.artifactMap}</projectArtifactMap>
<projectBuildDirectory default-value="${project.build.directory}"/>
<redirectTestOutputToFile default-value="false">${maven.test.redirectTestOutputToFile}</redirectTestOutputToFile>
<remoteRepositories default-value="${project.pluginArtifactRepositories}"/>
<reportFormat default-value="brief">${surefire.reportFormat}</reportFormat>
<reportNameSuffix default-value="">${surefire.reportNameSuffix}</reportNameSuffix>
<reportsDirectory default-value="${project.build.directory}/surefire-reports"/>
<rerunFailingTestsCount default-value="0">${surefire.rerunFailingTestsCount}</rerunFailingTestsCount>
<reuseForks default-value="true">${reuseForks}</reuseForks>
<runOrder default-value="filesystem">${surefire.runOrder}</runOrder>
<shutdown default-value="testset">${surefire.shutdown}</shutdown>
<skip default-value="false">${maven.test.skip}</skip>
<skipAfterFailureCount default-value="0">${surefire.skipAfterFailureCount}</skipAfterFailureCount>
<skipExec>${maven.test.skip.exec}</skipExec>
<skipTests default-value="false">${skipTests}</skipTests>
<suiteXmlFiles>${surefire.suiteXmlFiles}</suiteXmlFiles>
<tempDir default-value="surefire">${tempDir}</tempDir>
<test>${test}</test>
<testClassesDirectory default-value="${project.build.testOutputDirectory}"/>
<testFailureIgnore default-value="false">${maven.test.failure.ignore}</testFailureIgnore>
<testNGArtifactName default-value="org.testng:testng">${testNGArtifactName}</testNGArtifactName>
<testSourceDirectory default-value="${project.build.testSourceDirectory}"/>
<threadCount>${threadCount}</threadCount>
<threadCountClasses default-value="0">${threadCountClasses}</threadCountClasses>
<threadCountMethods default-value="0">${threadCountMethods}</threadCountMethods>
<threadCountSuites default-value="0">${threadCountSuites}</threadCountSuites>
<trimStackTrace default-value="true">${trimStackTrace}</trimStackTrace>
<useFile default-value="true">${surefire.useFile}</useFile>
<useManifestOnlyJar default-value="true">${surefire.useManifestOnlyJar}</useManifestOnlyJar>
<useSystemClassLoader default-value="true">${surefire.useSystemClassLoader}</useSystemClassLoader>
<useUnlimitedThreads default-value="false">${useUnlimitedThreads}</useUnlimitedThreads>
<workingDirectory>${basedir}</workingDirectory>
<project default-value="${project}"/>
<session default-value="${session}"/>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.4:jar (default-jar)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<classesDirectory default-value="${project.build.outputDirectory}"/>
<defaultManifestFile default-value="${project.build.outputDirectory}/META-INF/MANIFEST.MF"/>
<finalName default-value="${project.build.finalName}">${jar.finalName}</finalName>
<forceCreation default-value="false">${jar.forceCreation}</forceCreation>
<outputDirectory default-value="${project.build.directory}"/>
<project default-value="${project}"/>
<session default-value="${session}"/>
<skipIfEmpty default-value="false">${jar.skipIfEmpty}</skipIfEmpty>
<useDefaultManifestFile default-value="false">${jar.useDefaultManifestFile}</useDefaultManifestFile>
</configuration>
[DEBUG] --- init fork of org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (default) ---
[DEBUG] Dependencies (collect): []
[DEBUG] Dependencies (resolve): []
[DEBUG] --- exit fork of org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT for org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (default) ---
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-source-plugin:3.0.1:jar (default)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<attach default-value="true">${maven.source.attach}</attach>
<classifier default-value="sources">${maven.source.classifier}</classifier>
<defaultManifestFile default-value="${project.build.outputDirectory}/META-INF/MANIFEST.MF"/>
<excludeResources default-value="false">${maven.source.excludeResources}</excludeResources>
<finalName default-value="${project.build.finalName}"/>
<forceCreation default-value="false">${maven.source.forceCreation}</forceCreation>
<includePom default-value="false">${maven.source.includePom}</includePom>
<outputDirectory default-value="${project.build.directory}"/>
<project default-value="${project}"/>
<reactorProjects default-value="${reactorProjects}"/>
<session default-value="${session}"/>
<skipSource default-value="false">${maven.source.skip}</skipSource>
<useDefaultExcludes default-value="true">${maven.source.useDefaultExcludes}</useDefaultExcludes>
<useDefaultManifestFile default-value="false">${maven.source.useDefaultManifestFile}</useDefaultManifestFile>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-javadoc-plugin:3.0.1:jar (attach-javadocs)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<additionalJOption>${additionalJOption}</additionalJOption>
<applyJavadocSecurityFix default-value="true">${maven.javadoc.applyJavadocSecurityFix}</applyJavadocSecurityFix>
<attach default-value="true">${attach}</attach>
<author default-value="true">${author}</author>
<bootclasspath>${bootclasspath}</bootclasspath>
<bootclasspathArtifacts>${bootclasspathArtifacts}</bootclasspathArtifacts>
<bottom default-value="Copyright &amp;#169; {inceptionYear}&amp;#x2013;{currentYear} {organizationName}. All rights reserved.">${bottom}</bottom>
<breakiterator default-value="false">${breakiterator}</breakiterator>
<charset>${charset}</charset>
<classifier default-value="javadoc">${maven.javadoc.classifier}</classifier>
<debug default-value="false">${debug}</debug>
<defaultManifestFile default-value="${project.build.outputDirectory}/META-INF/MANIFEST.MF"/>
<destDir>${destDir}</destDir>
<detectJavaApiLink default-value="true">${detectJavaApiLink}</detectJavaApiLink>
<detectLinks default-value="false">${detectLinks}</detectLinks>
<detectOfflineLinks default-value="true">${detectOfflineLinks}</detectOfflineLinks>
<docencoding default-value="${project.reporting.outputEncoding}">${docencoding}</docencoding>
<docfilessubdirs default-value="false">${docfilessubdirs}</docfilessubdirs>
<doclet>${doclet}</doclet>
<docletArtifact>${docletArtifact}</docletArtifact>
<docletArtifacts>${docletArtifacts}</docletArtifacts>
<docletPath>${docletPath}</docletPath>
<doclint>${doclint}</doclint>
<doctitle default-value="${project.name} ${project.version} API">${doctitle}</doctitle>
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding>
<excludePackageNames>${excludePackageNames}</excludePackageNames>
<excludedocfilessubdir>${excludedocfilessubdir}</excludedocfilessubdir>
<extdirs>${extdirs}</extdirs>
<failOnError default-value="true">${maven.javadoc.failOnError}</failOnError>
<failOnWarnings default-value="false">${maven.javadoc.failOnWarnings}</failOnWarnings>
<finalName>${project.build.finalName}</finalName>
<footer>${footer}</footer>
<groups>${groups}</groups>
<header>${header}</header>
<helpfile>${helpfile}</helpfile>
<includeDependencySources default-value="false"/>
<includeTransitiveDependencySources default-value="false"/>
<isOffline default-value="${settings.offline}"/>
<jarOutputDirectory>${project.build.directory}</jarOutputDirectory>
<javaApiLinks>${javaApiLinks}</javaApiLinks>
<javadocDirectory default-value="${basedir}/src/main/javadoc"/>
<javadocExecutable>${javadocExecutable}</javadocExecutable>
<javadocOptionsDir default-value="${project.build.directory}/javadoc-bundle-options"/>
<javadocVersion>${javadocVersion}</javadocVersion>
<keywords default-value="false">${keywords}</keywords>
<links>${links}</links>
<linksource default-value="false">${linksource}</linksource>
<localRepository>${localRepository}</localRepository>
<locale>${locale}</locale>
<maxmemory>${maxmemory}</maxmemory>
<minmemory>${minmemory}</minmemory>
<mojo default-value="${mojoExecution}"/>
<nocomment default-value="false">${nocomment}</nocomment>
<nodeprecated default-value="false">${nodeprecated}</nodeprecated>
<nodeprecatedlist default-value="false">${nodeprecatedlist}</nodeprecatedlist>
<nohelp default-value="false">${nohelp}</nohelp>
<noindex default-value="false">${noindex}</noindex>
<nonavbar default-value="false">${nonavbar}</nonavbar>
<nooverview default-value="false">${nooverview}</nooverview>
<noqualifier>${noqualifier}</noqualifier>
<nosince default-value="false">${nosince}</nosince>
<notimestamp default-value="false">${notimestamp}</notimestamp>
<notree default-value="false">${notree}</notree>
<offlineLinks>${offlineLinks}</offlineLinks>
<old default-value="false">${old}</old>
<outputDirectory default-value="${project.build.directory}/apidocs">${destDir}</outputDirectory>
<overview default-value="${basedir}/src/main/javadoc/overview.html">${overview}</overview>
<packagesheader>${packagesheader}</packagesheader>
<project default-value="${project}"/>
<quiet default-value="false">${quiet}</quiet>
<reactorProjects>${reactorProjects}</reactorProjects>
<resourcesArtifacts>${resourcesArtifacts}</resourcesArtifacts>
<serialwarn default-value="false">${serialwarn}</serialwarn>
<session default-value="${session}"/>
<settings default-value="${settings}"/>
<show default-value="protected">${show}</show>
<skip default-value="false">${maven.javadoc.skip}</skip>
<source>${source}</source>
<sourceDependencyCacheDir default-value="${project.build.directory}/distro-javadoc-sources"/>
<sourcepath>${sourcepath}</sourcepath>
<sourcetab>${sourcetab}</sourcetab>
<splitindex default-value="false">${splitindex}</splitindex>
<stylesheet default-value="java">${stylesheet}</stylesheet>
<stylesheetfile>${stylesheetfile}</stylesheetfile>
<subpackages>${subpackages}</subpackages>
<taglet>${taglet}</taglet>
<tagletArtifact>${tagletArtifact}</tagletArtifact>
<tagletArtifacts>${tagletArtifacts}</tagletArtifacts>
<tagletpath>${tagletpath}</tagletpath>
<taglets>${taglets}</taglets>
<tags>${tags}</tags>
<top>${top}</top>
<use default-value="true">${use}</use>
<useDefaultManifestFile default-value="false"/>
<useStandardDocletOptions default-value="true">${useStandardDocletOptions}</useStandardDocletOptions>
<validateLinks default-value="false">${validateLinks}</validateLinks>
<verbose default-value="false">${verbose}</verbose>
<version default-value="true">${version}</version>
<windowtitle default-value="${project.name} ${project.version} API">${windowtitle}</windowtitle>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: io.fabric8:docker-maven-plugin:0.30.0:start (start-docker-its)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<apiVersion>1.24</apiVersion>
<autoCreateCustomNetworks default-value="false">true</autoCreateCustomNetworks>
<autoPull>${docker.autoPull}</autoPull>
<certPath>${docker.certPath}</certPath>
<containerNamePattern>${docker.containerNamePattern}</containerNamePattern>
<dockerHost>${docker.host}</dockerHost>
<execution>${mojoExecution}</execution>
<exposeContainerProps>${docker.exposeContainerInfo}</exposeContainerProps>
<filter>${docker.filter}</filter>
<imagePullPolicy>${docker.imagePullPolicy}</imagePullPolicy>
<images>
<image>
<name>oapass/fcrepo:4.7.5-3.2-5</name>
<run>
<hostname>fcrepo</hostname>
<env>
<FCREPO_HOST>fcrepo</FCREPO_HOST>
<FCREPO_PORT>${FCREPO_PORT}</FCREPO_PORT>
<FCREPO_JMS_PORT>${FCREPO_JMS_PORT}</FCREPO_JMS_PORT>
<FCREPO_STOMP_PORT>${FCREPO_STOMP_PORT}</FCREPO_STOMP_PORT>
<FCREPO_JMS_BASEURL>http://${docker.host.address}:${FCREPO_PORT}/fcrepo/rest</FCREPO_JMS_BASEURL>
<FCREPO_ACTIVEMQ_CONFIGURATION>classpath:/activemq-queue.xml</FCREPO_ACTIVEMQ_CONFIGURATION>
<COMPACTION_URI>https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld</COMPACTION_URI>
<COMPACTION_PRELOAD_URI_PASS_STATIC>https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld</COMPACTION_PRELOAD_URI_PASS_STATIC>
<COMPACTION_PRELOAD_FILE_PASS_STATIC>/usr/local/tomcat/lib/context-3.1.jsonld</COMPACTION_PRELOAD_FILE_PASS_STATIC>
</env>
<ports>
<port>${FCREPO_PORT}:${FCREPO_PORT}</port>
</ports>
<network>
<mode>custom</mode>
<name>pass</name>
<alias>fcrepo</alias>
<alias>localhost</alias>
</network>
<volumes>
<bind>./src/test/resources/docker/mnt:/mnt</bind>
</volumes>
<wait>
<http>
<url>http://fedoraAdmin:moo@${docker.host.address}:${FCREPO_PORT}/fcrepo/rest</url>
</http>
<time>120000</time>
</wait>
</run>
</image>
<image>
<name>oapass/indexer@sha256:e51092a9d433219d52207f1ec3f5ea7c652d51f516bcbe9434dae556b921546d</name>
<run>
<env>
<PI_FEDORA_USER>fedoraAdmin</PI_FEDORA_USER>
<PI_FEDORA_PASS>moo</PI_FEDORA_PASS>
<PI_FEDORA_INTERNAL_BASE>http://fcrepo:${FCREPO_PORT}/fcrepo/rest/</PI_FEDORA_INTERNAL_BASE>
<PI_ES_BASE>http://elasticsearch:9200/</PI_ES_BASE>
<PI_ES_INDEX>http://elasticsearch:9200/pass/</PI_ES_INDEX>
<PI_FEDORA_JMS_BROKER>tcp://fcrepo:${FCREPO_JMS_PORT}</PI_FEDORA_JMS_BROKER>
<PI_FEDORA_JMS_QUEUE>fedora</PI_FEDORA_JMS_QUEUE>
<PI_TYPE_PREFIX>http://oapass.org/ns/pass#</PI_TYPE_PREFIX>
<PI_LOG_LEVEL>debug</PI_LOG_LEVEL>
<PI_ES_CONFIG>/app/esconfig-3.4.json</PI_ES_CONFIG>
</env>
<links>
<link>fcrepo:localhost</link>
<link>elasticsearch</link>
</links>
<volumes>
<bind>./src/test/resources/docker/hosts:/etc/hosts</bind>
</volumes>
<network>
<mode>custom</mode>
<name>pass</name>
<alias>indexer</alias>
</network>
</run>
</image>
<image>
<name>docker.elastic.co/elasticsearch/elasticsearch-oss:6.2.3</name>
<run>
<env>
<discovery.type>single-node</discovery.type>
<bootstrap.memory_lock>true</bootstrap.memory_lock>
<ES_JAVA_OPTS>-Xms512m -Xmx512m</ES_JAVA_OPTS>
</env>
<ports>
<port>${ES_PORT}:9200</port>
</ports>
<network>
<mode>custom</mode>
<name>pass</name>
<alias>elasticsearch</alias>
</network>
<wait>
<http>
<url>http://${docker.host.address}:${ES_PORT}/</url>
</http>
<time>120000</time>
</wait>
</run>
</image>
</images>
<keepContainer default-value="false">${docker.keepContainer}</keepContainer>
<logDate>${docker.logDate}</logDate>
<logStdout default-value="false">${docker.logStdout}</logStdout>
<maxConnections default-value="100">${docker.maxConnections}</maxConnections>
<project default-value="${project}"/>
<pullRegistry>${docker.pull.registry}</pullRegistry>
<registry>${docker.registry}</registry>
<removeVolumes default-value="false">${docker.removeVolumes}</removeVolumes>
<session>${session}</session>
<settings default-value="${settings}"/>
<showLogs>${docker.showLogs}</showLogs>
<skip default-value="false">${docker.skip}</skip>
<skipExtendedAuth default-value="false">${docker.skip.extendedAuth}</skipExtendedAuth>
<skipMachine default-value="false">${docker.skip.machine}</skipMachine>
<skipRun default-value="false">${docker.skip.run}</skipRun>
<startParallel default-value="false">${docker.startParallel}</startParallel>
<useColor default-value="true">${docker.useColor}</useColor>
<verbose>${docker.verbose}</verbose>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-failsafe-plugin:2.21.0:integration-test (default)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<additionalClasspathElements>${maven.test.additionalClasspath}</additionalClasspathElements>
<argLine>${argLine}</argLine>
<basedir default-value="${basedir}"/>
<childDelegation default-value="false">${childDelegation}</childDelegation>
<classpathDependencyExcludes>${maven.test.dependency.excludes}</classpathDependencyExcludes>
<debugForkedProcess>${maven.failsafe.debug}</debugForkedProcess>
<defaultClassesDirectory default-value="${project.build.outputDirectory}"/>
<dependenciesToScan>${dependenciesToScan}</dependenciesToScan>
<disableXmlReport default-value="false">${disableXmlReport}</disableXmlReport>
<enableAssertions default-value="true">${enableAssertions}</enableAssertions>
<encoding default-value="${project.reporting.outputEncoding}">${encoding}</encoding>
<excludedGroups>${excludedGroups}</excludedGroups>
<excludesFile>${failsafe.excludesFile}</excludesFile>
<failIfNoSpecifiedTests>${it.failIfNoSpecifiedTests}</failIfNoSpecifiedTests>
<failIfNoTests>${failIfNoTests}</failIfNoTests>
<forkCount default-value="1">${forkCount}</forkCount>
<forkMode default-value="once">${forkMode}</forkMode>
<forkedProcessExitTimeoutInSeconds default-value="30">${failsafe.exitTimeout}</forkedProcessExitTimeoutInSeconds>
<forkedProcessTimeoutInSeconds>${failsafe.timeout}</forkedProcessTimeoutInSeconds>
<groups>${groups}</groups>
<includesFile>${failsafe.includesFile}</includesFile>
<junitArtifactName default-value="junit:junit">${junitArtifactName}</junitArtifactName>
<jvm>${jvm}</jvm>
<localRepository default-value="${localRepository}"/>
<objectFactory>${objectFactory}</objectFactory>
<parallel>${parallel}</parallel>
<parallelMavenExecution default-value="${session.parallel}"/>
<parallelOptimized default-value="true">${parallelOptimized}</parallelOptimized>
<parallelTestsTimeoutForcedInSeconds>${failsafe.parallel.forcedTimeout}</parallelTestsTimeoutForcedInSeconds>
<parallelTestsTimeoutInSeconds>${failsafe.parallel.timeout}</parallelTestsTimeoutInSeconds>
<perCoreThreadCount default-value="true">${perCoreThreadCount}</perCoreThreadCount>
<pluginArtifactMap>${plugin.artifactMap}</pluginArtifactMap>
<pluginDescriptor default-value="${plugin}"/>
<printSummary default-value="true">${failsafe.printSummary}</printSummary>
<projectArtifactMap>${project.artifactMap}</projectArtifactMap>
<projectBuildDirectory default-value="${project.build.directory}"/>
<redirectTestOutputToFile default-value="false">${maven.test.redirectTestOutputToFile}</redirectTestOutputToFile>
<remoteRepositories default-value="${project.pluginArtifactRepositories}"/>
<reportFormat default-value="brief">${failsafe.reportFormat}</reportFormat>
<reportNameSuffix default-value="">${surefire.reportNameSuffix}</reportNameSuffix>
<reportsDirectory default-value="${project.build.directory}/failsafe-reports"/>
<rerunFailingTestsCount default-value="0">${failsafe.rerunFailingTestsCount}</rerunFailingTestsCount>
<reuseForks default-value="true">${reuseForks}</reuseForks>
<runOrder default-value="filesystem">${failsafe.runOrder}</runOrder>
<shutdown default-value="testset">${failsafe.shutdown}</shutdown>
<skip default-value="false">${maven.test.skip}</skip>
<skipAfterFailureCount default-value="0">${failsafe.skipAfterFailureCount}</skipAfterFailureCount>
<skipExec>${maven.test.skip.exec}</skipExec>
<skipITs>${skipITs}</skipITs>
<skipTests default-value="false">${skipTests}</skipTests>
<suiteXmlFiles>${failsafe.suiteXmlFiles}</suiteXmlFiles>
<summaryFile default-value="${project.build.directory}/failsafe-reports/failsafe-summary.xml"/>
<systemProperties>
<pass.fedora.baseurl>http://${docker.host.address}:${FCREPO_PORT}/fcrepo/rest/</pass.fedora.baseurl>
<pass.elasticsearch.url>http://${docker.host.address}:${ES_PORT}</pass.elasticsearch.url>
</systemProperties>
<tempDir default-value="surefire">${tempDir}</tempDir>
<test>${it.test}</test>
<testClassesDirectory default-value="${project.build.testOutputDirectory}"/>
<testNGArtifactName default-value="org.testng:testng">${testNGArtifactName}</testNGArtifactName>
<testSourceDirectory default-value="${project.build.testSourceDirectory}"/>
<threadCount>${threadCount}</threadCount>
<threadCountClasses default-value="0">${threadCountClasses}</threadCountClasses>
<threadCountMethods default-value="0">${threadCountMethods}</threadCountMethods>
<threadCountSuites default-value="0">${threadCountSuites}</threadCountSuites>
<trimStackTrace default-value="true">false</trimStackTrace>
<useFile default-value="true">${failsafe.useFile}</useFile>
<useManifestOnlyJar default-value="true">${failsafe.useManifestOnlyJar}</useManifestOnlyJar>
<useSystemClassLoader default-value="true">${failsafe.useSystemClassLoader}</useSystemClassLoader>
<useUnlimitedThreads default-value="false">${useUnlimitedThreads}</useUnlimitedThreads>
<workingDirectory>${basedir}</workingDirectory>
<project default-value="${project}"/>
<session default-value="${session}"/>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: io.fabric8:docker-maven-plugin:0.30.0:stop (stop-docker-its)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<allContainers default-value="false">${docker.allContainers}</allContainers>
<apiVersion>1.24</apiVersion>
<autoCreateCustomNetworks default-value="false">true</autoCreateCustomNetworks>
<autoPull>${docker.autoPull}</autoPull>
<certPath>${docker.certPath}</certPath>
<containerNamePattern>${docker.containerNamePattern}</containerNamePattern>
<dockerHost>${docker.host}</dockerHost>
<execution>${mojoExecution}</execution>
<filter>${docker.filter}</filter>
<imagePullPolicy>${docker.imagePullPolicy}</imagePullPolicy>
<images>
<image>
<name>oapass/fcrepo:4.7.5-3.2-5</name>
<run>
<hostname>fcrepo</hostname>
<env>
<FCREPO_HOST>fcrepo</FCREPO_HOST>
<FCREPO_PORT>${FCREPO_PORT}</FCREPO_PORT>
<FCREPO_JMS_PORT>${FCREPO_JMS_PORT}</FCREPO_JMS_PORT>
<FCREPO_STOMP_PORT>${FCREPO_STOMP_PORT}</FCREPO_STOMP_PORT>
<FCREPO_JMS_BASEURL>http://${docker.host.address}:${FCREPO_PORT}/fcrepo/rest</FCREPO_JMS_BASEURL>
<FCREPO_ACTIVEMQ_CONFIGURATION>classpath:/activemq-queue.xml</FCREPO_ACTIVEMQ_CONFIGURATION>
<COMPACTION_URI>https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld</COMPACTION_URI>
<COMPACTION_PRELOAD_URI_PASS_STATIC>https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld</COMPACTION_PRELOAD_URI_PASS_STATIC>
<COMPACTION_PRELOAD_FILE_PASS_STATIC>/usr/local/tomcat/lib/context-3.1.jsonld</COMPACTION_PRELOAD_FILE_PASS_STATIC>
</env>
<ports>
<port>${FCREPO_PORT}:${FCREPO_PORT}</port>
</ports>
<network>
<mode>custom</mode>
<name>pass</name>
<alias>fcrepo</alias>
<alias>localhost</alias>
</network>
<volumes>
<bind>./src/test/resources/docker/mnt:/mnt</bind>
</volumes>
<wait>
<http>
<url>http://fedoraAdmin:moo@${docker.host.address}:${FCREPO_PORT}/fcrepo/rest</url>
</http>
<time>120000</time>
</wait>
</run>
</image>
<image>
<name>oapass/indexer@sha256:e51092a9d433219d52207f1ec3f5ea7c652d51f516bcbe9434dae556b921546d</name>
<run>
<env>
<PI_FEDORA_USER>fedoraAdmin</PI_FEDORA_USER>
<PI_FEDORA_PASS>moo</PI_FEDORA_PASS>
<PI_FEDORA_INTERNAL_BASE>http://fcrepo:${FCREPO_PORT}/fcrepo/rest/</PI_FEDORA_INTERNAL_BASE>
<PI_ES_BASE>http://elasticsearch:9200/</PI_ES_BASE>
<PI_ES_INDEX>http://elasticsearch:9200/pass/</PI_ES_INDEX>
<PI_FEDORA_JMS_BROKER>tcp://fcrepo:${FCREPO_JMS_PORT}</PI_FEDORA_JMS_BROKER>
<PI_FEDORA_JMS_QUEUE>fedora</PI_FEDORA_JMS_QUEUE>
<PI_TYPE_PREFIX>http://oapass.org/ns/pass#</PI_TYPE_PREFIX>
<PI_LOG_LEVEL>debug</PI_LOG_LEVEL>
<PI_ES_CONFIG>/app/esconfig-3.4.json</PI_ES_CONFIG>
</env>
<links>
<link>fcrepo:localhost</link>
<link>elasticsearch</link>
</links>
<volumes>
<bind>./src/test/resources/docker/hosts:/etc/hosts</bind>
</volumes>
<network>
<mode>custom</mode>
<name>pass</name>
<alias>indexer</alias>
</network>
</run>
</image>
<image>
<name>docker.elastic.co/elasticsearch/elasticsearch-oss:6.2.3</name>
<run>
<env>
<discovery.type>single-node</discovery.type>
<bootstrap.memory_lock>true</bootstrap.memory_lock>
<ES_JAVA_OPTS>-Xms512m -Xmx512m</ES_JAVA_OPTS>
</env>
<ports>
<port>${ES_PORT}:9200</port>
</ports>
<network>
<mode>custom</mode>
<name>pass</name>
<alias>elasticsearch</alias>
</network>
<wait>
<http>
<url>http://${docker.host.address}:${ES_PORT}/</url>
</http>
<time>120000</time>
</wait>
</run>
</image>
</images>
<keepContainer default-value="false">${docker.keepContainer}</keepContainer>
<keepRunning default-value="false">${docker.keepRunning}</keepRunning>
<logDate>${docker.logDate}</logDate>
<logStdout default-value="false">${docker.logStdout}</logStdout>
<maxConnections default-value="100">${docker.maxConnections}</maxConnections>
<project default-value="${project}"/>
<registry>${docker.registry}</registry>
<removeVolumes default-value="false">${docker.removeVolumes}</removeVolumes>
<session>${session}</session>
<settings default-value="${settings}"/>
<skip default-value="false">${docker.skip}</skip>
<skipExtendedAuth default-value="false">${docker.skip.extendedAuth}</skipExtendedAuth>
<skipMachine default-value="false">${docker.skip.machine}</skipMachine>
<sledgeHammer default-value="false">${docker.sledgeHammer}</sledgeHammer>
<useColor default-value="true">${docker.useColor}</useColor>
<verbose>${docker.verbose}</verbose>
</configuration>
[DEBUG] -----------------------------------------------------------------------
[DEBUG] Goal: org.apache.maven.plugins:maven-failsafe-plugin:2.21.0:verify (default)
[DEBUG] Style: Regular
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?>
<configuration>
<basedir default-value="${basedir}"/>
<encoding default-value="${project.reporting.outputEncoding}">${encoding}</encoding>
<failIfNoTests>${failIfNoTests}</failIfNoTests>
<reportsDirectory default-value="${project.build.directory}/failsafe-reports"/>
<skip default-value="false">${maven.test.skip}</skip>
<skipExec>${maven.test.skip.exec}</skipExec>
<skipITs>${skipITs}</skipITs>
<skipTests>${skipTests}</skipTests>
<summaryFile default-value="${project.build.directory}/failsafe-reports/failsafe-summary.xml"/>
<testClassesDirectory default-value="${project.build.testOutputDirectory}"/>
<testFailureIgnore default-value="false">${maven.test.failure.ignore}</testFailureIgnore>
<session default-value="${session}"/>
</configuration>
[DEBUG] =======================================================================
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-data-transform-load-cli:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-data-transform-load-cli:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:pass-nihms-submission-etl:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-data-transform-load:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-data-transform-load:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:entrez-pmid-lookup:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:entrez-pmid-lookup:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-etl-util:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-etl-util:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-etl-model:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-etl-model:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-pass-client:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Skipped remote request for org.dataconservancy.pass:nihms-pass-client:1.4.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=1, ConflictMarker.markTime=0, ConflictMarker.nodeCount=108, ConflictIdSorter.graphTime=1, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=77, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=8, ConflictResolver.conflictItemCount=107, DefaultDependencyCollector.collectTime=339, DefaultDependencyCollector.transformTime=11}
[DEBUG] org.dataconservancy.pass:nihms-etl-integration:jar:1.4.1-SNAPSHOT
[DEBUG] org.dataconservancy.pass:nihms-data-transform-load-cli:jar:1.4.1-SNAPSHOT:compile
[DEBUG] org.dataconservancy.pass:nihms-data-transform-load:jar:1.4.1-SNAPSHOT:compile
[DEBUG] org.dataconservancy.pass:entrez-pmid-lookup:jar:1.4.1-SNAPSHOT:compile
[DEBUG] org.apache.httpcomponents:httpclient:jar:4.5.2:compile (version managed from 4.5.2) (optionality managed from false)
[DEBUG] org.apache.httpcomponents:httpcore:jar:4.4.4:compile
[DEBUG] commons-logging:commons-logging:jar:1.2:compile
[DEBUG] commons-codec:commons-codec:jar:1.9:compile
[DEBUG] commons-io:commons-io:jar:2.6:compile (version managed from 2.6) (optionality managed from false)
[DEBUG] org.json:json:jar:20180130:compile (version managed from 20180130) (optionality managed from false)
[DEBUG] org.dataconservancy.pass:nihms-etl-util:jar:1.4.1-SNAPSHOT:compile
[DEBUG] org.dataconservancy.pass:nihms-etl-model:jar:1.4.1-SNAPSHOT:compile
[DEBUG] org.dataconservancy.pass:pass-model:jar:0.8.0:compile (version managed from 0.6.0) (optionality managed from false)
[DEBUG] joda-time:joda-time:jar:2.10.10:compile
[DEBUG] org.dataconservancy.pass:pass-status-service:jar:0.8.0:compile (version managed from 0.6.0) (optionality managed from false)
[DEBUG] org.dataconservancy.pass:pass-client-api:jar:0.8.0:compile (version managed from 0.8.0) (optionality managed from false)
[DEBUG] org.dataconservancy.pass:pass-data-client:jar:0.8.0:compile (version managed from 0.8.0) (optionality managed from false)
[DEBUG] org.dataconservancy.pass:pass-json-adapter:jar:0.8.0:compile
[DEBUG] com.fasterxml.jackson.core:jackson-databind:jar:2.9.10.7:compile
[DEBUG] com.fasterxml.jackson.core:jackson-annotations:jar:2.9.10:compile
[DEBUG] com.fasterxml.jackson.core:jackson-core:jar:2.9.10:compile
[DEBUG] org.dataconservancy.pass:pass-client-util:jar:0.8.0:compile
[DEBUG] org.fcrepo.client:fcrepo-java-client:jar:0.3.0:compile
[DEBUG] org.apache.commons:commons-lang3:jar:3.3.2:compile
[DEBUG] org.elasticsearch.client:elasticsearch-rest-high-level-client:jar:6.7.2:compile
[DEBUG] org.elasticsearch:elasticsearch:jar:6.7.2:compile
[DEBUG] org.elasticsearch:elasticsearch-core:jar:6.7.2:compile
[DEBUG] org.elasticsearch:elasticsearch-secure-sm:jar:6.7.2:compile
[DEBUG] org.elasticsearch:elasticsearch-x-content:jar:6.7.2:compile
[DEBUG] org.yaml:snakeyaml:jar:1.17:compile
[DEBUG] com.fasterxml.jackson.dataformat:jackson-dataformat-smile:jar:2.8.11:compile
[DEBUG] com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:jar:2.8.11:compile
[DEBUG] com.fasterxml.jackson.dataformat:jackson-dataformat-cbor:jar:2.8.11:compile
[DEBUG] org.apache.lucene:lucene-core:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-analyzers-common:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-backward-codecs:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-grouping:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-highlighter:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-join:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-memory:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-misc:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-queries:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-queryparser:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-sandbox:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-spatial:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-spatial-extras:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-spatial3d:jar:7.7.0:compile
[DEBUG] org.apache.lucene:lucene-suggest:jar:7.7.0:compile
[DEBUG] org.elasticsearch:elasticsearch-cli:jar:6.7.2:compile
[DEBUG] net.sf.jopt-simple:jopt-simple:jar:5.0.2:compile
[DEBUG] com.carrotsearch:hppc:jar:0.7.1:compile
[DEBUG] com.tdunning:t-digest:jar:3.2:compile
[DEBUG] org.hdrhistogram:HdrHistogram:jar:2.1.9:compile
[DEBUG] org.elasticsearch:jna:jar:4.5.1:compile
[DEBUG] org.elasticsearch.client:elasticsearch-rest-client:jar:6.7.2:compile
[DEBUG] org.apache.httpcomponents:httpasyncclient:jar:4.1.2:compile
[DEBUG] org.apache.httpcomponents:httpcore-nio:jar:4.4.5:compile
[DEBUG] org.elasticsearch.plugin:parent-join-client:jar:6.7.2:compile
[DEBUG] org.elasticsearch.plugin:aggs-matrix-stats-client:jar:6.7.2:compile
[DEBUG] org.elasticsearch.plugin:rank-eval-client:jar:6.7.2:compile
[DEBUG] org.elasticsearch.plugin:lang-mustache-client:jar:6.7.2:compile
[DEBUG] com.github.spullara.mustache.java:compiler:jar:0.9.3:compile
[DEBUG] org.slf4j:jcl-over-slf4j:jar:1.7.29:runtime
[DEBUG] org.slf4j:log4j-over-slf4j:jar:1.7.29:runtime
[DEBUG] com.squareup.okhttp3:okhttp:jar:3.14.1:compile (version managed from 4.2.2) (optionality managed from false)
[DEBUG] com.squareup.okio:okio:jar:1.17.2:compile
[DEBUG] com.squareup.okhttp3:logging-interceptor:jar:4.2.2:compile
[DEBUG] org.apache.logging.log4j:log4j-to-slf4j:jar:2.14.1:runtime
[DEBUG] org.apache.logging.log4j:log4j-api:jar:2.14.1:runtime
[DEBUG] org.apache.commons:commons-csv:jar:1.5:compile (version managed from 1.5) (optionality managed from false)
[DEBUG] org.dataconservancy.pass:nihms-pass-client:jar:1.4.1-SNAPSHOT:compile
[DEBUG] args4j:args4j:jar:2.33:compile (version managed from 2.33) (optionality managed from false)
[DEBUG] org.slf4j:slf4j-api:jar:1.7.25:compile
[DEBUG] junit:junit:jar:4.12:test
[DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test
[DEBUG] org.mockito:mockito-all:jar:1.9.5:test
[DEBUG] ch.qos.logback:logback-classic:jar:1.2.3:test
[DEBUG] ch.qos.logback:logback-core:jar:1.2.3:test
[INFO]
[INFO] --- build-helper-maven-plugin:3.0.0:reserve-network-port (reserve-port) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=82, ConflictIdSorter.graphTime=1, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=31, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1, ConflictResolver.conflictItemCount=80, DefaultDependencyCollector.collectTime=109, DefaultDependencyCollector.transformTime=2}
[DEBUG] org.codehaus.mojo:build-helper-maven-plugin:jar:3.0.0:
[DEBUG] org.apache.maven:maven-core:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile
[DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime
[DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile
[DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile
[DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile
[DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile
[DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile
[DEBUG] org.beanshell:bsh:jar:2.0b4:compile
[DEBUG] org.apache.maven.shared:file-management:jar:3.0.0:compile
[DEBUG] org.apache.maven.shared:maven-shared-io:jar:3.0.0:compile
[DEBUG] org.apache.maven:maven-compat:jar:3.0:compile
[DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:2.10:compile
[DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.0:compile
[DEBUG] commons-io:commons-io:jar:2.4:compile
[DEBUG] com.google.code.findbugs:jsr305:jar:2.0.1:compile
[DEBUG] Created new class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:3.0.0
[DEBUG] Importing foreign packages into class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:3.0.0
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.codehaus.mojo:build-helper-maven-plugin:3.0.0
[DEBUG] Included: org.codehaus.mojo:build-helper-maven-plugin:jar:3.0.0
[DEBUG] Included: org.apache.maven:maven-aether-provider:jar:3.0
[DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7
[DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2
[DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14
[DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5
[DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3
[DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24
[DEBUG] Included: org.beanshell:bsh:jar:2.0b4
[DEBUG] Included: org.apache.maven.shared:file-management:jar:3.0.0
[DEBUG] Included: org.apache.maven.shared:maven-shared-io:jar:3.0.0
[DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.0
[DEBUG] Included: commons-io:commons-io:jar:2.4
[DEBUG] Included: com.google.code.findbugs:jsr305:jar:2.0.1
[DEBUG] Configuring mojo org.codehaus.mojo:build-helper-maven-plugin:3.0.0:reserve-network-port from plugin realm ClassRealm[plugin>org.codehaus.mojo:build-helper-maven-plugin:3.0.0, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.codehaus.mojo:build-helper-maven-plugin:3.0.0:reserve-network-port' with basic configurator -->
[DEBUG] (f) portNames = [FCREPO_PORT, ES_PORT, FCREPO_JMS_PORT, FCREPO_STOMP_PORT]
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] -- end configuration --
[INFO] Reserved port 54802 for FCREPO_PORT
[INFO] Reserved port 54803 for ES_PORT
[INFO] Reserved port 54804 for FCREPO_JMS_PORT
[INFO] Reserved port 54805 for FCREPO_STOMP_PORT
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=77, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=26, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1, ConflictResolver.conflictItemCount=74, DefaultDependencyCollector.collectTime=65, DefaultDependencyCollector.transformTime=1}
[DEBUG] org.apache.maven.plugins:maven-resources-plugin:jar:2.6:
[DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-project:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-profile:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-core:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.6:compile
[DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.0.6:compile
[DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.6:compile
[DEBUG] commons-cli:commons-cli:jar:1.0:compile
[DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.6:compile
[DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile
[DEBUG] classworlds:classworlds:jar:1.1:compile
[DEBUG] org.apache.maven:maven-artifact:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-settings:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-model:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-monitor:jar:2.0.6:compile
[DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile
[DEBUG] junit:junit:jar:3.8.1:compile
[DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.5:compile
[DEBUG] org.apache.maven.shared:maven-filtering:jar:1.1:compile
[DEBUG] org.sonatype.plexus:plexus-build-api:jar:0.0.4:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.13:compile
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.6
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.6
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.6
[DEBUG] Included: org.apache.maven.plugins:maven-resources-plugin:jar:2.6
[DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.0.6
[DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7
[DEBUG] Included: commons-cli:commons-cli:jar:1.0
[DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4
[DEBUG] Included: junit:junit:jar:3.8.1
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.5
[DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:1.1
[DEBUG] Included: org.sonatype.plexus:plexus-build-api:jar:0.0.4
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.13
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:2.6:resources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:2.6, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:2.6:resources' with basic configurator -->
[DEBUG] (f) buildFilters = []
[DEBUG] (f) encoding = UTF-8
[DEBUG] (f) escapeWindowsPaths = true
[DEBUG] (s) includeEmptyDirs = false
[DEBUG] (s) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes
[DEBUG] (s) overwrite = false
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/main/resources, PatternSet [includes: {}, excludes: {}]}}]
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) supportMultiLineFiltering = false
[DEBUG] (f) useBuildFilters = true
[DEBUG] (s) useDefaultDelimiters = true
[DEBUG] -- end configuration --
[DEBUG] properties used {java.vendor=Oracle Corporation, sun.java.launcher=SUN_STANDARD, env.XPC_SERVICE_NAME=0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env.SECURITYSESSIONID=186a7, os.name=Mac OS X, sun.boot.class.path=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/resources.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/rt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/sunrsasign.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/jsse.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/jce.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/charsets.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/jfr.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/classes, env.TMPDIR=/var/folders/s_/811jggs509z2164r66rmdz1r0000gn/T/, env.PWD=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, env.LANG=en_US.UTF-8, java.vm.specification.vendor=Oracle Corporation, java.runtime.version=1.8.0_201-b09, build-helper-maven-plugin.version=3.0.0, env.Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.3UoUOBKrqU/Render, project.build.sourceEncoding=UTF-8, env.GITAWAREPROMPT=/Users/esm/.bash/git-aware-prompt, user.name=esm, maven.build.version=Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426; 2017-04-03T15:39:06-04:00), env.USER=esm, logback.version=1.2.3, env.SHELL=/usr/local/bin/fish, env.__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0, env.DCORE_DATA=/Volumes/Volumes 1/blockchain/dcore/decentd/data, pass-client.version=0.8.0, env.PATH=:/Users/esm/iCloud/bin:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/go/bin:/usr/local/MacGPG2/bin:/Applications/Wireshark.app/Contents/MacOS:/usr/local/sbin:/Users/esm/maven-3/bin:/Users/esm/bin:/Users/esm/gradle/bin:/Users/esm/ant/bin, mockito.version=1.9.5, user.language=en, sun.boot.library.path=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib, ES_HOST=${docker.host.address}, classworlds.conf=/Users/esm/maven-3/bin/m2.conf, maven-javadoc-plugin.version=3.0.1, env.XPC_FLAGS=0x0, java.version=1.8.0_201, user.timezone=America/New_York, sun.arch.data.model=64, http.nonProxyHosts=local|*.local|169.254/16|*.169.254/16, java.endorsed.dirs=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/endorsed, sun.cpu.isalist=, sun.jnu.encoding=UTF-8, file.encoding.pkg=sun.io, env.SHLVL=2, maven-shade-plugin.version=3.1.0, FCREPO_HOST=${docker.host.address}, file.separator=/, java.specification.name=Java Platform API Specification, maven.conf=/Users/esm/maven-3/conf, java.class.version=52.0, org.slf4j.simpleLogger.defaultLogLevel=debug, env.IPFS_STAGE=/Volumes/Volumes 1/blockchain/ipfs/staging, user.country=US, handy-uri-templates.version=2.1.8, java.home=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre, java.vm.info=mixed mode, env.LOGNAME=esm, os.version=10.14.6, maven-gpg-plugin.version=1.6, maven-failsafe-plugin.version=2.21.0, env.TERM_PROGRAM_VERSION=421.2, path.separator=:, java.vm.version=25.201-b09, docker.verbose=all, env.JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home, java.awt.printerjob=sun.lwawt.macosx.CPrinterJob, env.TERM=xterm-256color, maven-surefire-plugin.version=2.22.2, sun.io.unicode.encoding=UnicodeBig, awt.toolkit=sun.lwawt.macosx.LWCToolkit, socksNonProxyHosts=local|*.local|169.254/16|*.169.254/16, ftp.nonProxyHosts=local|*.local|169.254/16|*.169.254/16, env.LSCOLORS=dxgxbxfxCxxxxxxxxxdxdx, maven-source-plugin.version=3.0.1, user.home=/Users/esm, maven-compiler-plugin.version=3.6.1, env.OLDPWD=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, java.specification.vendor=Oracle Corporation, selenium.version=3.11.0, http-client.version=4.5.2, env.TERM_PROGRAM=Apple_Terminal, library.jansi.path=/Users/esm/maven-3/lib/jansi-native/osx64, java.library.path=/Users/esm/Library/Java/Extensions:/Library/Java/Extensions:/Network/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java:., java.vendor.url=http://java.oracle.com/, ES_PORT=54803, env.MAVEN_CMD_LINE_ARGS= -X -e -Ddocker.verbose=all verify, env.FOO=BAR, java.vm.vendor=Oracle Corporation, gopherProxySet=false, maven.home=/Users/esm/maven-3, env.IPFS_HOME=/Volumes/Volumes 1/blockchain/ipfs, java.runtime.name=Java(TM) SE Runtime Environment, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher -X -e -Ddocker.verbose=all verify, java.class.path=/Users/esm/maven-3/boot/plexus-classworlds-2.5.2.jar, env.TERM_SESSION_ID=89EBB7F4-9FA5-466D-A2B1-92E8E26DC16A, maven.version=3.5.0, slf4j.version=1.7.25, env.JAVA_MAIN_CLASS_19086=org.codehaus.plexus.classworlds.launcher.Launcher, java.vm.specification.name=Java Virtual Machine Specification, maven.deploy.plugin.version=2.8.2, FCREPO_PORT=54802, java.vm.specification.version=1.8, sun.cpu.endian=little, sun.os.patch.level=unknown, env.HOME=/Users/esm, commons-csv.version=1.5, java.io.tmpdir=/var/folders/s_/811jggs509z2164r66rmdz1r0000gn/T/, env.OMF_PATH=/Users/esm/.local/share/omf, commons-io.version=2.6, java.vendor.url.bug=http://bugreport.sun.com/bugreport/, maven.multiModuleProjectDirectory=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, env.SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.45aQGNpGiq/Listeners, os.arch=x86_64, java.awt.graphicsenv=sun.awt.CGraphicsEnvironment, java.ext.dirs=/Users/esm/Library/Java/Extensions:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/ext:/Library/Java/Extensions:/Network/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java, env.OMF_CONFIG=/Users/esm/.config/omf, user.dir=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, line.separator=
, java.vm.name=Java HotSpot(TM) 64-Bit Server VM, maven-release-plugin.version=2.5.3, okhttp.version=3.14.1, env.IPFS_DATA=/Volumes/Volumes 1/blockchain/ipfs/data, FCREPO_JMS_PORT=54804, maven.wagon.ssh.version=2.10, org-json.version=20180130, file.encoding=UTF-8, FCREPO_STOMP_PORT=54805, env.DCORE_PACKAGES=/Volumes/Volumes 1/blockchain/dcore/packages, args4j.version=2.33, java.specification.version=1.8, env.DCORE_HOME=/Volumes/Volumes 1/blockchain/dcore, junit.version=4.12, docker-maven-plugin.version=0.30.0, env.MAVEN_PROJECTBASEDIR=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration}
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[DEBUG] resource with targetPath null
directory /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/main/resources
excludes []
includes []
[INFO] skip non existing resourceDirectory /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/main/resources
[DEBUG] no use filter components
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=117, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=44, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1, ConflictResolver.conflictItemCount=71, DefaultDependencyCollector.collectTime=69, DefaultDependencyCollector.transformTime=2}
[DEBUG] org.apache.maven.plugins:maven-compiler-plugin:jar:3.6.1:
[DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model:jar:3.0:compile
[DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile
[DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile
[DEBUG] org.codehaus.plexus:plexus-utils:jar:2.0.4:compile
[DEBUG] org.apache.maven:maven-core:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime
[DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile
[DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile
[DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile
[DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.1.0:compile
[DEBUG] commons-io:commons-io:jar:2.5:compile
[DEBUG] org.apache.maven.shared:maven-shared-incremental:jar:1.1:compile
[DEBUG] org.ow2.asm:asm:jar:6.0_ALPHA:compile
[DEBUG] com.thoughtworks.qdox:qdox:jar:2.0-M5:compile
[DEBUG] org.codehaus.plexus:plexus-compiler-api:jar:2.8.1:compile
[DEBUG] org.codehaus.plexus:plexus-compiler-manager:jar:2.8.1:compile
[DEBUG] org.codehaus.plexus:plexus-compiler-javac:jar:2.8.1:runtime
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.6.1
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.6.1
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:3.6.1
[DEBUG] Included: org.apache.maven.plugins:maven-compiler-plugin:jar:3.6.1
[DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2
[DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:2.0.4
[DEBUG] Included: org.apache.maven:maven-aether-provider:jar:3.0
[DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14
[DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6
[DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3
[DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.1.0
[DEBUG] Included: commons-io:commons-io:jar:2.5
[DEBUG] Included: org.apache.maven.shared:maven-shared-incremental:jar:1.1
[DEBUG] Included: org.ow2.asm:asm:jar:6.0_ALPHA
[DEBUG] Included: com.thoughtworks.qdox:qdox:jar:2.0-M5
[DEBUG] Included: org.codehaus.plexus:plexus-compiler-api:jar:2.8.1
[DEBUG] Included: org.codehaus.plexus:plexus-compiler-manager:jar:2.8.1
[DEBUG] Included: org.codehaus.plexus:plexus-compiler-javac:jar:2.8.1
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:3.6.1:compile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:3.6.1, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:3.6.1:compile' with basic configurator -->
[DEBUG] (f) basedir = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration
[DEBUG] (f) buildDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target
[DEBUG] (f) compilePath = [/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-data-transform-load-cli/1.4.1-SNAPSHOT/nihms-data-transform-load-cli-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-data-transform-load/1.4.1-SNAPSHOT/nihms-data-transform-load-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/entrez-pmid-lookup/1.4.1-SNAPSHOT/entrez-pmid-lookup-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpclient/4.5.2/httpclient-4.5.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpcore/4.4.4/httpcore-4.4.4.jar, /Users/esm/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar, /Users/esm/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar, /Users/esm/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar, /Users/esm/.m2/repository/org/json/json/20180130/json-20180130.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-etl-util/1.4.1-SNAPSHOT/nihms-etl-util-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-etl-model/1.4.1-SNAPSHOT/nihms-etl-model-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-model/0.8.0/pass-model-0.8.0.jar, /Users/esm/.m2/repository/joda-time/joda-time/2.10.10/joda-time-2.10.10.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-status-service/0.8.0/pass-status-service-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-client-api/0.8.0/pass-client-api-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-data-client/0.8.0/pass-data-client-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-json-adapter/0.8.0/pass-json-adapter-0.8.0.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.9.10.7/jackson-databind-2.9.10.7.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.9.10/jackson-annotations-2.9.10.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.9.10/jackson-core-2.9.10.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-client-util/0.8.0/pass-client-util-0.8.0.jar, /Users/esm/.m2/repository/org/fcrepo/client/fcrepo-java-client/0.3.0/fcrepo-java-client-0.3.0.jar, /Users/esm/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar, /Users/esm/.m2/repository/org/elasticsearch/client/elasticsearch-rest-high-level-client/6.7.2/elasticsearch-rest-high-level-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch/6.7.2/elasticsearch-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-core/6.7.2/elasticsearch-core-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-secure-sm/6.7.2/elasticsearch-secure-sm-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-x-content/6.7.2/elasticsearch-x-content-6.7.2.jar, /Users/esm/.m2/repository/org/yaml/snakeyaml/1.17/snakeyaml-1.17.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-smile/2.8.11/jackson-dataformat-smile-2.8.11.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-yaml/2.8.11/jackson-dataformat-yaml-2.8.11.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-cbor/2.8.11/jackson-dataformat-cbor-2.8.11.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-core/7.7.0/lucene-core-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-analyzers-common/7.7.0/lucene-analyzers-common-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-backward-codecs/7.7.0/lucene-backward-codecs-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-grouping/7.7.0/lucene-grouping-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-highlighter/7.7.0/lucene-highlighter-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-join/7.7.0/lucene-join-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-memory/7.7.0/lucene-memory-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-misc/7.7.0/lucene-misc-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-queries/7.7.0/lucene-queries-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-queryparser/7.7.0/lucene-queryparser-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-sandbox/7.7.0/lucene-sandbox-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial/7.7.0/lucene-spatial-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial-extras/7.7.0/lucene-spatial-extras-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial3d/7.7.0/lucene-spatial3d-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-suggest/7.7.0/lucene-suggest-7.7.0.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-cli/6.7.2/elasticsearch-cli-6.7.2.jar, /Users/esm/.m2/repository/net/sf/jopt-simple/jopt-simple/5.0.2/jopt-simple-5.0.2.jar, /Users/esm/.m2/repository/com/carrotsearch/hppc/0.7.1/hppc-0.7.1.jar, /Users/esm/.m2/repository/com/tdunning/t-digest/3.2/t-digest-3.2.jar, /Users/esm/.m2/repository/org/hdrhistogram/HdrHistogram/2.1.9/HdrHistogram-2.1.9.jar, /Users/esm/.m2/repository/org/elasticsearch/jna/4.5.1/jna-4.5.1.jar, /Users/esm/.m2/repository/org/elasticsearch/client/elasticsearch-rest-client/6.7.2/elasticsearch-rest-client-6.7.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpasyncclient/4.1.2/httpasyncclient-4.1.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpcore-nio/4.4.5/httpcore-nio-4.4.5.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/parent-join-client/6.7.2/parent-join-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/aggs-matrix-stats-client/6.7.2/aggs-matrix-stats-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/rank-eval-client/6.7.2/rank-eval-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/lang-mustache-client/6.7.2/lang-mustache-client-6.7.2.jar, /Users/esm/.m2/repository/com/github/spullara/mustache/java/compiler/0.9.3/compiler-0.9.3.jar, /Users/esm/.m2/repository/com/squareup/okhttp3/okhttp/3.14.1/okhttp-3.14.1.jar, /Users/esm/.m2/repository/com/squareup/okio/okio/1.17.2/okio-1.17.2.jar, /Users/esm/.m2/repository/com/squareup/okhttp3/logging-interceptor/4.2.2/logging-interceptor-4.2.2.jar, /Users/esm/.m2/repository/org/apache/commons/commons-csv/1.5/commons-csv-1.5.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-pass-client/1.4.1-SNAPSHOT/nihms-pass-client-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/args4j/args4j/2.33/args4j-2.33.jar, /Users/esm/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar]
[DEBUG] (f) compileSourceRoots = [/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/main/java]
[DEBUG] (f) compilerId = javac
[DEBUG] (f) debug = true
[DEBUG] (f) encoding = UTF-8
[DEBUG] (f) failOnError = true
[DEBUG] (f) failOnWarning = false
[DEBUG] (f) forceJavacCompilerUse = false
[DEBUG] (f) fork = false
[DEBUG] (f) generatedSourcesDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/generated-sources/annotations
[DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-compiler-plugin:3.6.1:compile {execution: default-compile}
[DEBUG] (f) optimize = false
[DEBUG] (f) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (f) projectArtifact = org.dataconservancy.pass:nihms-etl-integration:jar:1.4.1-SNAPSHOT
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) showDeprecation = false
[DEBUG] (f) showWarnings = false
[DEBUG] (f) skipMultiThreadWarning = false
[DEBUG] (f) source = 1.8
[DEBUG] (f) staleMillis = 0
[DEBUG] (f) target = 1.8
[DEBUG] (f) useIncrementalCompilation = true
[DEBUG] (f) verbose = false
[DEBUG] -- end configuration --
[DEBUG] Using compiler 'javac'.
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ nihms-etl-integration ---
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:2.6:testResources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:2.6, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:2.6:testResources' with basic configurator -->
[DEBUG] (f) buildFilters = []
[DEBUG] (f) encoding = UTF-8
[DEBUG] (f) escapeWindowsPaths = true
[DEBUG] (s) includeEmptyDirs = false
[DEBUG] (s) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes
[DEBUG] (s) overwrite = false
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources, PatternSet [includes: {}, excludes: {}]}}]
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) supportMultiLineFiltering = false
[DEBUG] (f) useBuildFilters = true
[DEBUG] (s) useDefaultDelimiters = true
[DEBUG] -- end configuration --
[DEBUG] properties used {java.vendor=Oracle Corporation, sun.java.launcher=SUN_STANDARD, env.XPC_SERVICE_NAME=0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env.SECURITYSESSIONID=186a7, os.name=Mac OS X, sun.boot.class.path=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/resources.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/rt.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/sunrsasign.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/jsse.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/jce.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/charsets.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/jfr.jar:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/classes, env.TMPDIR=/var/folders/s_/811jggs509z2164r66rmdz1r0000gn/T/, env.PWD=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, env.LANG=en_US.UTF-8, java.vm.specification.vendor=Oracle Corporation, java.runtime.version=1.8.0_201-b09, build-helper-maven-plugin.version=3.0.0, env.Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.3UoUOBKrqU/Render, project.build.sourceEncoding=UTF-8, env.GITAWAREPROMPT=/Users/esm/.bash/git-aware-prompt, user.name=esm, maven.build.version=Apache Maven 3.5.0 (ff8f5e7444045639af65f6095c62210b5713f426; 2017-04-03T15:39:06-04:00), env.USER=esm, logback.version=1.2.3, env.SHELL=/usr/local/bin/fish, env.__CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0, env.DCORE_DATA=/Volumes/Volumes 1/blockchain/dcore/decentd/data, pass-client.version=0.8.0, env.PATH=:/Users/esm/iCloud/bin:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/go/bin:/usr/local/MacGPG2/bin:/Applications/Wireshark.app/Contents/MacOS:/usr/local/sbin:/Users/esm/maven-3/bin:/Users/esm/bin:/Users/esm/gradle/bin:/Users/esm/ant/bin, mockito.version=1.9.5, user.language=en, sun.boot.library.path=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib, ES_HOST=${docker.host.address}, classworlds.conf=/Users/esm/maven-3/bin/m2.conf, maven-javadoc-plugin.version=3.0.1, env.XPC_FLAGS=0x0, java.version=1.8.0_201, user.timezone=America/New_York, sun.arch.data.model=64, http.nonProxyHosts=local|*.local|169.254/16|*.169.254/16, java.endorsed.dirs=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/endorsed, sun.cpu.isalist=, sun.jnu.encoding=UTF-8, file.encoding.pkg=sun.io, env.SHLVL=2, maven-shade-plugin.version=3.1.0, FCREPO_HOST=${docker.host.address}, file.separator=/, java.specification.name=Java Platform API Specification, maven.conf=/Users/esm/maven-3/conf, java.class.version=52.0, org.slf4j.simpleLogger.defaultLogLevel=debug, env.IPFS_STAGE=/Volumes/Volumes 1/blockchain/ipfs/staging, user.country=US, handy-uri-templates.version=2.1.8, java.home=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre, java.vm.info=mixed mode, env.LOGNAME=esm, os.version=10.14.6, maven-gpg-plugin.version=1.6, maven-failsafe-plugin.version=2.21.0, env.TERM_PROGRAM_VERSION=421.2, path.separator=:, java.vm.version=25.201-b09, docker.verbose=all, env.JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home, java.awt.printerjob=sun.lwawt.macosx.CPrinterJob, env.TERM=xterm-256color, maven-surefire-plugin.version=2.22.2, sun.io.unicode.encoding=UnicodeBig, awt.toolkit=sun.lwawt.macosx.LWCToolkit, socksNonProxyHosts=local|*.local|169.254/16|*.169.254/16, ftp.nonProxyHosts=local|*.local|169.254/16|*.169.254/16, env.LSCOLORS=dxgxbxfxCxxxxxxxxxdxdx, maven-source-plugin.version=3.0.1, user.home=/Users/esm, maven-compiler-plugin.version=3.6.1, env.OLDPWD=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, java.specification.vendor=Oracle Corporation, selenium.version=3.11.0, http-client.version=4.5.2, env.TERM_PROGRAM=Apple_Terminal, library.jansi.path=/Users/esm/maven-3/lib/jansi-native/osx64, java.library.path=/Users/esm/Library/Java/Extensions:/Library/Java/Extensions:/Network/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java:., java.vendor.url=http://java.oracle.com/, ES_PORT=54803, env.MAVEN_CMD_LINE_ARGS= -X -e -Ddocker.verbose=all verify, env.FOO=BAR, java.vm.vendor=Oracle Corporation, gopherProxySet=false, maven.home=/Users/esm/maven-3, env.IPFS_HOME=/Volumes/Volumes 1/blockchain/ipfs, java.runtime.name=Java(TM) SE Runtime Environment, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher -X -e -Ddocker.verbose=all verify, java.class.path=/Users/esm/maven-3/boot/plexus-classworlds-2.5.2.jar, env.TERM_SESSION_ID=89EBB7F4-9FA5-466D-A2B1-92E8E26DC16A, maven.version=3.5.0, slf4j.version=1.7.25, env.JAVA_MAIN_CLASS_19086=org.codehaus.plexus.classworlds.launcher.Launcher, java.vm.specification.name=Java Virtual Machine Specification, maven.deploy.plugin.version=2.8.2, FCREPO_PORT=54802, java.vm.specification.version=1.8, sun.cpu.endian=little, sun.os.patch.level=unknown, env.HOME=/Users/esm, commons-csv.version=1.5, java.io.tmpdir=/var/folders/s_/811jggs509z2164r66rmdz1r0000gn/T/, env.OMF_PATH=/Users/esm/.local/share/omf, commons-io.version=2.6, java.vendor.url.bug=http://bugreport.sun.com/bugreport/, maven.multiModuleProjectDirectory=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, env.SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.45aQGNpGiq/Listeners, os.arch=x86_64, java.awt.graphicsenv=sun.awt.CGraphicsEnvironment, java.ext.dirs=/Users/esm/Library/Java/Extensions:/Library/Java/JavaVirtualMachines/jdk1.8.0_201.jdk/Contents/Home/jre/lib/ext:/Library/Java/Extensions:/Network/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java, env.OMF_CONFIG=/Users/esm/.config/omf, user.dir=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration, line.separator=
, java.vm.name=Java HotSpot(TM) 64-Bit Server VM, maven-release-plugin.version=2.5.3, okhttp.version=3.14.1, env.IPFS_DATA=/Volumes/Volumes 1/blockchain/ipfs/data, FCREPO_JMS_PORT=54804, maven.wagon.ssh.version=2.10, org-json.version=20180130, file.encoding=UTF-8, FCREPO_STOMP_PORT=54805, env.DCORE_PACKAGES=/Volumes/Volumes 1/blockchain/dcore/packages, args4j.version=2.33, java.specification.version=1.8, env.DCORE_HOME=/Volumes/Volumes 1/blockchain/dcore, junit.version=4.12, docker-maven-plugin.version=0.30.0, env.MAVEN_PROJECTBASEDIR=/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration}
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[DEBUG] resource with targetPath null
directory /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources
excludes []
includes []
[DEBUG] ignoreDelta true
[INFO] Copying 8 resources
[DEBUG] file logback-test.xml has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/logback-test.xml to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/logback-test.xml
[DEBUG] file README has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/docker/mnt/README to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/docker/mnt/README
[DEBUG] file hosts has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/docker/hosts to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/docker/hosts
[DEBUG] file pmidrecord.json has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/pmidrecord.json to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/pmidrecord.json
[DEBUG] file nihms-loader.properties has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/nihms-loader.properties to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/nihms-loader.properties
[DEBUG] file inprocess_NihmsData.csv has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/data/inprocess_NihmsData.csv to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/data/inprocess_NihmsData.csv
[DEBUG] file noncompliant_NihmsData.csv has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/data/noncompliant_NihmsData.csv to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/data/noncompliant_NihmsData.csv
[DEBUG] file compliant_NihmsData.csv has a filtered file extension
[DEBUG] copy /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/data/compliant_NihmsData.csv to /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes/data/compliant_NihmsData.csv
[DEBUG] no use filter components
[INFO]
[INFO] --- maven-compiler-plugin:3.6.1:testCompile (default-testCompile) @ nihms-etl-integration ---
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:3.6.1:testCompile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:3.6.1, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:3.6.1:testCompile' with basic configurator -->
[DEBUG] (f) basedir = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration
[DEBUG] (f) buildDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target
[DEBUG] (f) compilePath = [/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-data-transform-load-cli/1.4.1-SNAPSHOT/nihms-data-transform-load-cli-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-data-transform-load/1.4.1-SNAPSHOT/nihms-data-transform-load-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/entrez-pmid-lookup/1.4.1-SNAPSHOT/entrez-pmid-lookup-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpclient/4.5.2/httpclient-4.5.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpcore/4.4.4/httpcore-4.4.4.jar, /Users/esm/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar, /Users/esm/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar, /Users/esm/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar, /Users/esm/.m2/repository/org/json/json/20180130/json-20180130.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-etl-util/1.4.1-SNAPSHOT/nihms-etl-util-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-etl-model/1.4.1-SNAPSHOT/nihms-etl-model-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-model/0.8.0/pass-model-0.8.0.jar, /Users/esm/.m2/repository/joda-time/joda-time/2.10.10/joda-time-2.10.10.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-status-service/0.8.0/pass-status-service-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-client-api/0.8.0/pass-client-api-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-data-client/0.8.0/pass-data-client-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-json-adapter/0.8.0/pass-json-adapter-0.8.0.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.9.10.7/jackson-databind-2.9.10.7.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.9.10/jackson-annotations-2.9.10.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.9.10/jackson-core-2.9.10.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-client-util/0.8.0/pass-client-util-0.8.0.jar, /Users/esm/.m2/repository/org/fcrepo/client/fcrepo-java-client/0.3.0/fcrepo-java-client-0.3.0.jar, /Users/esm/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar, /Users/esm/.m2/repository/org/elasticsearch/client/elasticsearch-rest-high-level-client/6.7.2/elasticsearch-rest-high-level-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch/6.7.2/elasticsearch-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-core/6.7.2/elasticsearch-core-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-secure-sm/6.7.2/elasticsearch-secure-sm-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-x-content/6.7.2/elasticsearch-x-content-6.7.2.jar, /Users/esm/.m2/repository/org/yaml/snakeyaml/1.17/snakeyaml-1.17.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-smile/2.8.11/jackson-dataformat-smile-2.8.11.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-yaml/2.8.11/jackson-dataformat-yaml-2.8.11.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-cbor/2.8.11/jackson-dataformat-cbor-2.8.11.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-core/7.7.0/lucene-core-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-analyzers-common/7.7.0/lucene-analyzers-common-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-backward-codecs/7.7.0/lucene-backward-codecs-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-grouping/7.7.0/lucene-grouping-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-highlighter/7.7.0/lucene-highlighter-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-join/7.7.0/lucene-join-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-memory/7.7.0/lucene-memory-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-misc/7.7.0/lucene-misc-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-queries/7.7.0/lucene-queries-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-queryparser/7.7.0/lucene-queryparser-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-sandbox/7.7.0/lucene-sandbox-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial/7.7.0/lucene-spatial-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial-extras/7.7.0/lucene-spatial-extras-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial3d/7.7.0/lucene-spatial3d-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-suggest/7.7.0/lucene-suggest-7.7.0.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-cli/6.7.2/elasticsearch-cli-6.7.2.jar, /Users/esm/.m2/repository/net/sf/jopt-simple/jopt-simple/5.0.2/jopt-simple-5.0.2.jar, /Users/esm/.m2/repository/com/carrotsearch/hppc/0.7.1/hppc-0.7.1.jar, /Users/esm/.m2/repository/com/tdunning/t-digest/3.2/t-digest-3.2.jar, /Users/esm/.m2/repository/org/hdrhistogram/HdrHistogram/2.1.9/HdrHistogram-2.1.9.jar, /Users/esm/.m2/repository/org/elasticsearch/jna/4.5.1/jna-4.5.1.jar, /Users/esm/.m2/repository/org/elasticsearch/client/elasticsearch-rest-client/6.7.2/elasticsearch-rest-client-6.7.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpasyncclient/4.1.2/httpasyncclient-4.1.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpcore-nio/4.4.5/httpcore-nio-4.4.5.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/parent-join-client/6.7.2/parent-join-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/aggs-matrix-stats-client/6.7.2/aggs-matrix-stats-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/rank-eval-client/6.7.2/rank-eval-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/lang-mustache-client/6.7.2/lang-mustache-client-6.7.2.jar, /Users/esm/.m2/repository/com/github/spullara/mustache/java/compiler/0.9.3/compiler-0.9.3.jar, /Users/esm/.m2/repository/com/squareup/okhttp3/okhttp/3.14.1/okhttp-3.14.1.jar, /Users/esm/.m2/repository/com/squareup/okio/okio/1.17.2/okio-1.17.2.jar, /Users/esm/.m2/repository/com/squareup/okhttp3/logging-interceptor/4.2.2/logging-interceptor-4.2.2.jar, /Users/esm/.m2/repository/org/apache/commons/commons-csv/1.5/commons-csv-1.5.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-pass-client/1.4.1-SNAPSHOT/nihms-pass-client-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/args4j/args4j/2.33/args4j-2.33.jar, /Users/esm/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar]
[DEBUG] (f) compileSourceRoots = [/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/java]
[DEBUG] (f) compilerId = javac
[DEBUG] (f) debug = true
[DEBUG] (f) encoding = UTF-8
[DEBUG] (f) failOnError = true
[DEBUG] (f) failOnWarning = false
[DEBUG] (f) forceJavacCompilerUse = false
[DEBUG] (f) fork = false
[DEBUG] (f) generatedTestSourcesDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/generated-test-sources/test-annotations
[DEBUG] (f) mojoExecution = org.apache.maven.plugins:maven-compiler-plugin:3.6.1:testCompile {execution: default-testCompile}
[DEBUG] (f) optimize = false
[DEBUG] (f) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) showDeprecation = false
[DEBUG] (f) showWarnings = false
[DEBUG] (f) skipMultiThreadWarning = false
[DEBUG] (f) source = 1.8
[DEBUG] (f) staleMillis = 0
[DEBUG] (f) target = 1.8
[DEBUG] (f) testPath = [/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes, /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-data-transform-load-cli/1.4.1-SNAPSHOT/nihms-data-transform-load-cli-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-data-transform-load/1.4.1-SNAPSHOT/nihms-data-transform-load-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/entrez-pmid-lookup/1.4.1-SNAPSHOT/entrez-pmid-lookup-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpclient/4.5.2/httpclient-4.5.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpcore/4.4.4/httpcore-4.4.4.jar, /Users/esm/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar, /Users/esm/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar, /Users/esm/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar, /Users/esm/.m2/repository/org/json/json/20180130/json-20180130.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-etl-util/1.4.1-SNAPSHOT/nihms-etl-util-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-etl-model/1.4.1-SNAPSHOT/nihms-etl-model-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-model/0.8.0/pass-model-0.8.0.jar, /Users/esm/.m2/repository/joda-time/joda-time/2.10.10/joda-time-2.10.10.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-status-service/0.8.0/pass-status-service-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-client-api/0.8.0/pass-client-api-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-data-client/0.8.0/pass-data-client-0.8.0.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-json-adapter/0.8.0/pass-json-adapter-0.8.0.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.9.10.7/jackson-databind-2.9.10.7.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.9.10/jackson-annotations-2.9.10.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.9.10/jackson-core-2.9.10.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/pass-client-util/0.8.0/pass-client-util-0.8.0.jar, /Users/esm/.m2/repository/org/fcrepo/client/fcrepo-java-client/0.3.0/fcrepo-java-client-0.3.0.jar, /Users/esm/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar, /Users/esm/.m2/repository/org/elasticsearch/client/elasticsearch-rest-high-level-client/6.7.2/elasticsearch-rest-high-level-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch/6.7.2/elasticsearch-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-core/6.7.2/elasticsearch-core-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-secure-sm/6.7.2/elasticsearch-secure-sm-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-x-content/6.7.2/elasticsearch-x-content-6.7.2.jar, /Users/esm/.m2/repository/org/yaml/snakeyaml/1.17/snakeyaml-1.17.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-smile/2.8.11/jackson-dataformat-smile-2.8.11.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-yaml/2.8.11/jackson-dataformat-yaml-2.8.11.jar, /Users/esm/.m2/repository/com/fasterxml/jackson/dataformat/jackson-dataformat-cbor/2.8.11/jackson-dataformat-cbor-2.8.11.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-core/7.7.0/lucene-core-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-analyzers-common/7.7.0/lucene-analyzers-common-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-backward-codecs/7.7.0/lucene-backward-codecs-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-grouping/7.7.0/lucene-grouping-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-highlighter/7.7.0/lucene-highlighter-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-join/7.7.0/lucene-join-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-memory/7.7.0/lucene-memory-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-misc/7.7.0/lucene-misc-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-queries/7.7.0/lucene-queries-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-queryparser/7.7.0/lucene-queryparser-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-sandbox/7.7.0/lucene-sandbox-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial/7.7.0/lucene-spatial-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial-extras/7.7.0/lucene-spatial-extras-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-spatial3d/7.7.0/lucene-spatial3d-7.7.0.jar, /Users/esm/.m2/repository/org/apache/lucene/lucene-suggest/7.7.0/lucene-suggest-7.7.0.jar, /Users/esm/.m2/repository/org/elasticsearch/elasticsearch-cli/6.7.2/elasticsearch-cli-6.7.2.jar, /Users/esm/.m2/repository/net/sf/jopt-simple/jopt-simple/5.0.2/jopt-simple-5.0.2.jar, /Users/esm/.m2/repository/com/carrotsearch/hppc/0.7.1/hppc-0.7.1.jar, /Users/esm/.m2/repository/com/tdunning/t-digest/3.2/t-digest-3.2.jar, /Users/esm/.m2/repository/org/hdrhistogram/HdrHistogram/2.1.9/HdrHistogram-2.1.9.jar, /Users/esm/.m2/repository/org/elasticsearch/jna/4.5.1/jna-4.5.1.jar, /Users/esm/.m2/repository/org/elasticsearch/client/elasticsearch-rest-client/6.7.2/elasticsearch-rest-client-6.7.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpasyncclient/4.1.2/httpasyncclient-4.1.2.jar, /Users/esm/.m2/repository/org/apache/httpcomponents/httpcore-nio/4.4.5/httpcore-nio-4.4.5.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/parent-join-client/6.7.2/parent-join-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/aggs-matrix-stats-client/6.7.2/aggs-matrix-stats-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/rank-eval-client/6.7.2/rank-eval-client-6.7.2.jar, /Users/esm/.m2/repository/org/elasticsearch/plugin/lang-mustache-client/6.7.2/lang-mustache-client-6.7.2.jar, /Users/esm/.m2/repository/com/github/spullara/mustache/java/compiler/0.9.3/compiler-0.9.3.jar, /Users/esm/.m2/repository/org/slf4j/jcl-over-slf4j/1.7.29/jcl-over-slf4j-1.7.29.jar, /Users/esm/.m2/repository/org/slf4j/log4j-over-slf4j/1.7.29/log4j-over-slf4j-1.7.29.jar, /Users/esm/.m2/repository/com/squareup/okhttp3/okhttp/3.14.1/okhttp-3.14.1.jar, /Users/esm/.m2/repository/com/squareup/okio/okio/1.17.2/okio-1.17.2.jar, /Users/esm/.m2/repository/com/squareup/okhttp3/logging-interceptor/4.2.2/logging-interceptor-4.2.2.jar, /Users/esm/.m2/repository/org/apache/logging/log4j/log4j-to-slf4j/2.14.1/log4j-to-slf4j-2.14.1.jar, /Users/esm/.m2/repository/org/apache/logging/log4j/log4j-api/2.14.1/log4j-api-2.14.1.jar, /Users/esm/.m2/repository/org/apache/commons/commons-csv/1.5/commons-csv-1.5.jar, /Users/esm/.m2/repository/org/dataconservancy/pass/nihms-pass-client/1.4.1-SNAPSHOT/nihms-pass-client-1.4.1-SNAPSHOT.jar, /Users/esm/.m2/repository/args4j/args4j/2.33/args4j-2.33.jar, /Users/esm/.m2/repository/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar, /Users/esm/.m2/repository/junit/junit/4.12/junit-4.12.jar, /Users/esm/.m2/repository/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar, /Users/esm/.m2/repository/org/mockito/mockito-all/1.9.5/mockito-all-1.9.5.jar, /Users/esm/.m2/repository/ch/qos/logback/logback-classic/1.2.3/logback-classic-1.2.3.jar, /Users/esm/.m2/repository/ch/qos/logback/logback-core/1.2.3/logback-core-1.2.3.jar]
[DEBUG] (f) useIncrementalCompilation = true
[DEBUG] (f) verbose = false
[DEBUG] -- end configuration --
[DEBUG] Using compiler 'javac'.
[DEBUG] Adding /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/generated-test-sources/test-annotations to test-compile source roots:
/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/java
[DEBUG] New test-compile source roots:
/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/java
/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/generated-test-sources/test-annotations
[DEBUG] CompilerReuseStrategy: reuseCreated
[DEBUG] useIncrementalCompilation enabled
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=114, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=37, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1, ConflictResolver.conflictItemCount=79, DefaultDependencyCollector.collectTime=32, DefaultDependencyCollector.transformTime=1}
[DEBUG] org.apache.maven.plugins:maven-surefire-plugin:jar:2.22.2:
[DEBUG] org.apache.maven.surefire:maven-surefire-common:jar:2.22.2:compile
[DEBUG] org.apache.maven:maven-plugin-api:jar:2.2.1:compile
[DEBUG] org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.5.2:compile
[DEBUG] org.apache.maven.surefire:surefire-api:jar:2.22.2:compile
[DEBUG] org.apache.maven.surefire:surefire-logger-api:jar:2.22.2:compile
[DEBUG] org.apache.maven.surefire:surefire-booter:jar:2.22.2:compile
[DEBUG] org.apache.maven:maven-artifact:jar:2.2.1:compile
[DEBUG] org.codehaus.plexus:plexus-utils:jar:1.5.15:compile
[DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile
[DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile
[DEBUG] junit:junit:jar:4.12:compile
[DEBUG] org.hamcrest:hamcrest-core:jar:1.3:compile
[DEBUG] org.apache.maven:maven-project:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-settings:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-profile:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-artifact-manager:jar:2.2.1:compile
[DEBUG] backport-util-concurrent:backport-util-concurrent:jar:3.1:compile
[DEBUG] org.apache.maven:maven-plugin-registry:jar:2.2.1:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.11:compile
[DEBUG] org.apache.maven:maven-model:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-core:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile
[DEBUG] org.slf4j:slf4j-jdk14:jar:1.5.6:runtime
[DEBUG] org.slf4j:slf4j-api:jar:1.5.6:runtime
[DEBUG] org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime
[DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:3.0:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile
[DEBUG] org.apache.maven:maven-monitor:jar:2.2.1:compile
[DEBUG] classworlds:classworlds:jar:1.1:compile
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile
[DEBUG] org.apache.maven:maven-toolchain:jar:2.2.1:compile
[DEBUG] org.codehaus.plexus:plexus-java:jar:0.9.10:compile
[DEBUG] org.ow2.asm:asm:jar:6.2:compile
[DEBUG] com.thoughtworks.qdox:qdox:jar:2.0-M8:compile
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-surefire-plugin:2.22.2
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-surefire-plugin:2.22.2
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-surefire-plugin:2.22.2
[DEBUG] Included: org.apache.maven.plugins:maven-surefire-plugin:jar:2.22.2
[DEBUG] Included: org.apache.maven.surefire:maven-surefire-common:jar:2.22.2
[DEBUG] Included: org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.5.2
[DEBUG] Included: org.apache.maven.surefire:surefire-api:jar:2.22.2
[DEBUG] Included: org.apache.maven.surefire:surefire-logger-api:jar:2.22.2
[DEBUG] Included: org.apache.maven.surefire:surefire-booter:jar:2.22.2
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:1.5.15
[DEBUG] Included: junit:junit:jar:4.12
[DEBUG] Included: org.hamcrest:hamcrest-core:jar:1.3
[DEBUG] Included: backport-util-concurrent:backport-util-concurrent:jar:3.1
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.11
[DEBUG] Included: org.slf4j:slf4j-jdk14:jar:1.5.6
[DEBUG] Included: org.slf4j:jcl-over-slf4j:jar:1.5.6
[DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:3.0
[DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3
[DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG] Included: org.codehaus.plexus:plexus-java:jar:0.9.10
[DEBUG] Included: org.ow2.asm:asm:jar:6.2
[DEBUG] Included: com.thoughtworks.qdox:qdox:jar:2.0-M8
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-surefire-plugin:2.22.2:test from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-surefire-plugin:2.22.2, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-surefire-plugin:2.22.2:test' with basic configurator -->
[DEBUG] (s) additionalClasspathElements = []
[DEBUG] (s) basedir = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration
[DEBUG] (s) childDelegation = false
[DEBUG] (s) classesDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes
[DEBUG] (s) classpathDependencyExcludes = []
[DEBUG] (s) dependenciesToScan = []
[DEBUG] (s) disableXmlReport = false
[DEBUG] (s) enableAssertions = true
[DEBUG] (f) forkCount = 1
[DEBUG] (s) forkMode = once
[DEBUG] (s) forkedProcessExitTimeoutInSeconds = 30
[DEBUG] (s) junitArtifactName = junit:junit
[DEBUG] (s) junitPlatformArtifactName = org.junit.platform:junit-platform-engine
[DEBUG] (s) localRepository = id: local
url: file:///Users/esm/.m2/repository/
layout: default
snapshots: [enabled => true, update => always]
releases: [enabled => true, update => always]
[DEBUG] (f) parallelMavenExecution = false
[DEBUG] (s) parallelOptimized = true
[DEBUG] (s) perCoreThreadCount = true
[DEBUG] (s) pluginArtifactMap = {org.apache.maven.plugins:maven-surefire-plugin=org.apache.maven.plugins:maven-surefire-plugin:maven-plugin:2.22.2:, org.apache.maven.surefire:maven-surefire-common=org.apache.maven.surefire:maven-surefire-common:jar:2.22.2:compile, org.apache.maven:maven-plugin-api=org.apache.maven:maven-plugin-api:jar:2.2.1:compile, org.apache.maven.plugin-tools:maven-plugin-annotations=org.apache.maven.plugin-tools:maven-plugin-annotations:jar:3.5.2:compile, org.apache.maven.surefire:surefire-api=org.apache.maven.surefire:surefire-api:jar:2.22.2:compile, org.apache.maven.surefire:surefire-logger-api=org.apache.maven.surefire:surefire-logger-api:jar:2.22.2:compile, org.apache.maven.surefire:surefire-booter=org.apache.maven.surefire:surefire-booter:jar:2.22.2:compile, org.apache.maven:maven-artifact=org.apache.maven:maven-artifact:jar:2.2.1:compile, org.codehaus.plexus:plexus-utils=org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.apache.maven:maven-plugin-descriptor=org.apache.maven:maven-plugin-descriptor:jar:2.2.1:compile, org.codehaus.plexus:plexus-container-default=org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit=junit:junit:jar:4.12:compile, org.hamcrest:hamcrest-core=org.hamcrest:hamcrest-core:jar:1.3:compile, org.apache.maven:maven-project=org.apache.maven:maven-project:jar:2.2.1:compile, org.apache.maven:maven-settings=org.apache.maven:maven-settings:jar:2.2.1:compile, org.apache.maven:maven-profile=org.apache.maven:maven-profile:jar:2.2.1:compile, org.apache.maven:maven-artifact-manager=org.apache.maven:maven-artifact-manager:jar:2.2.1:compile, backport-util-concurrent:backport-util-concurrent=backport-util-concurrent:backport-util-concurrent:jar:3.1:compile, org.apache.maven:maven-plugin-registry=org.apache.maven:maven-plugin-registry:jar:2.2.1:compile, org.codehaus.plexus:plexus-interpolation=org.codehaus.plexus:plexus-interpolation:jar:1.11:compile, org.apache.maven:maven-model=org.apache.maven:maven-model:jar:2.2.1:compile, org.apache.maven:maven-core=org.apache.maven:maven-core:jar:2.2.1:compile, org.apache.maven:maven-plugin-parameter-documenter=org.apache.maven:maven-plugin-parameter-documenter:jar:2.2.1:compile, org.slf4j:slf4j-jdk14=org.slf4j:slf4j-jdk14:jar:1.5.6:runtime, org.slf4j:slf4j-api=org.slf4j:slf4j-api:jar:1.5.6:runtime, org.slf4j:jcl-over-slf4j=org.slf4j:jcl-over-slf4j:jar:1.5.6:runtime, org.apache.maven.reporting:maven-reporting-api=org.apache.maven.reporting:maven-reporting-api:jar:3.0:compile, org.apache.maven:maven-repository-metadata=org.apache.maven:maven-repository-metadata:jar:2.2.1:compile, org.apache.maven:maven-error-diagnostics=org.apache.maven:maven-error-diagnostics:jar:2.2.1:compile, org.apache.maven:maven-monitor=org.apache.maven:maven-monitor:jar:2.2.1:compile, classworlds:classworlds=classworlds:classworlds:jar:1.1:compile, org.sonatype.plexus:plexus-sec-dispatcher=org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile, org.sonatype.plexus:plexus-cipher=org.sonatype.plexus:plexus-cipher:jar:1.4:compile, org.apache.maven:maven-toolchain=org.apache.maven:maven-toolchain:jar:2.2.1:compile, org.codehaus.plexus:plexus-java=org.codehaus.plexus:plexus-java:jar:0.9.10:compile, org.ow2.asm:asm=org.ow2.asm:asm:jar:6.2:compile, com.thoughtworks.qdox:qdox=com.thoughtworks.qdox:qdox:jar:2.0-M8:compile}
[DEBUG] (f) pluginDescriptor = Component Descriptor: role: 'org.apache.maven.plugin.Mojo', implementation: 'org.apache.maven.plugin.surefire.HelpMojo', role hint: 'org.apache.maven.plugins:maven-surefire-plugin:2.22.2:help'
role: 'org.apache.maven.plugin.Mojo', implementation: 'org.apache.maven.plugin.surefire.SurefirePlugin', role hint: 'org.apache.maven.plugins:maven-surefire-plugin:2.22.2:test'
---
[DEBUG] (s) printSummary = true
[DEBUG] (s) projectArtifactMap = {org.dataconservancy.pass:nihms-data-transform-load-cli=org.dataconservancy.pass:nihms-data-transform-load-cli:jar:1.4.1-SNAPSHOT:compile, org.dataconservancy.pass:nihms-data-transform-load=org.dataconservancy.pass:nihms-data-transform-load:jar:1.4.1-SNAPSHOT:compile, org.dataconservancy.pass:entrez-pmid-lookup=org.dataconservancy.pass:entrez-pmid-lookup:jar:1.4.1-SNAPSHOT:compile, org.apache.httpcomponents:httpclient=org.apache.httpcomponents:httpclient:jar:4.5.2:compile, org.apache.httpcomponents:httpcore=org.apache.httpcomponents:httpcore:jar:4.4.4:compile, commons-logging:commons-logging=commons-logging:commons-logging:jar:1.2:compile, commons-codec:commons-codec=commons-codec:commons-codec:jar:1.9:compile, commons-io:commons-io=commons-io:commons-io:jar:2.6:compile, org.json:json=org.json:json:jar:20180130:compile, org.dataconservancy.pass:nihms-etl-util=org.dataconservancy.pass:nihms-etl-util:jar:1.4.1-SNAPSHOT:compile, org.dataconservancy.pass:nihms-etl-model=org.dataconservancy.pass:nihms-etl-model:jar:1.4.1-SNAPSHOT:compile, org.dataconservancy.pass:pass-model=org.dataconservancy.pass:pass-model:jar:0.8.0:compile, joda-time:joda-time=joda-time:joda-time:jar:2.10.10:compile, org.dataconservancy.pass:pass-status-service=org.dataconservancy.pass:pass-status-service:jar:0.8.0:compile, org.dataconservancy.pass:pass-client-api=org.dataconservancy.pass:pass-client-api:jar:0.8.0:compile, org.dataconservancy.pass:pass-data-client=org.dataconservancy.pass:pass-data-client:jar:0.8.0:compile, org.dataconservancy.pass:pass-json-adapter=org.dataconservancy.pass:pass-json-adapter:jar:0.8.0:compile, com.fasterxml.jackson.core:jackson-databind=com.fasterxml.jackson.core:jackson-databind:jar:2.9.10.7:compile, com.fasterxml.jackson.core:jackson-annotations=com.fasterxml.jackson.core:jackson-annotations:jar:2.9.10:compile, com.fasterxml.jackson.core:jackson-core=com.fasterxml.jackson.core:jackson-core:jar:2.9.10:compile, org.dataconservancy.pass:pass-client-util=org.dataconservancy.pass:pass-client-util:jar:0.8.0:compile, org.fcrepo.client:fcrepo-java-client=org.fcrepo.client:fcrepo-java-client:jar:0.3.0:compile, org.apache.commons:commons-lang3=org.apache.commons:commons-lang3:jar:3.3.2:compile, org.elasticsearch.client:elasticsearch-rest-high-level-client=org.elasticsearch.client:elasticsearch-rest-high-level-client:jar:6.7.2:compile, org.elasticsearch:elasticsearch=org.elasticsearch:elasticsearch:jar:6.7.2:compile, org.elasticsearch:elasticsearch-core=org.elasticsearch:elasticsearch-core:jar:6.7.2:compile, org.elasticsearch:elasticsearch-secure-sm=org.elasticsearch:elasticsearch-secure-sm:jar:6.7.2:compile, org.elasticsearch:elasticsearch-x-content=org.elasticsearch:elasticsearch-x-content:jar:6.7.2:compile, org.yaml:snakeyaml=org.yaml:snakeyaml:jar:1.17:compile, com.fasterxml.jackson.dataformat:jackson-dataformat-smile=com.fasterxml.jackson.dataformat:jackson-dataformat-smile:jar:2.8.11:compile, com.fasterxml.jackson.dataformat:jackson-dataformat-yaml=com.fasterxml.jackson.dataformat:jackson-dataformat-yaml:jar:2.8.11:compile, com.fasterxml.jackson.dataformat:jackson-dataformat-cbor=com.fasterxml.jackson.dataformat:jackson-dataformat-cbor:jar:2.8.11:compile, org.apache.lucene:lucene-core=org.apache.lucene:lucene-core:jar:7.7.0:compile, org.apache.lucene:lucene-analyzers-common=org.apache.lucene:lucene-analyzers-common:jar:7.7.0:compile, org.apache.lucene:lucene-backward-codecs=org.apache.lucene:lucene-backward-codecs:jar:7.7.0:compile, org.apache.lucene:lucene-grouping=org.apache.lucene:lucene-grouping:jar:7.7.0:compile, org.apache.lucene:lucene-highlighter=org.apache.lucene:lucene-highlighter:jar:7.7.0:compile, org.apache.lucene:lucene-join=org.apache.lucene:lucene-join:jar:7.7.0:compile, org.apache.lucene:lucene-memory=org.apache.lucene:lucene-memory:jar:7.7.0:compile, org.apache.lucene:lucene-misc=org.apache.lucene:lucene-misc:jar:7.7.0:compile, org.apache.lucene:lucene-queries=org.apache.lucene:lucene-queries:jar:7.7.0:compile, org.apache.lucene:lucene-queryparser=org.apache.lucene:lucene-queryparser:jar:7.7.0:compile, org.apache.lucene:lucene-sandbox=org.apache.lucene:lucene-sandbox:jar:7.7.0:compile, org.apache.lucene:lucene-spatial=org.apache.lucene:lucene-spatial:jar:7.7.0:compile, org.apache.lucene:lucene-spatial-extras=org.apache.lucene:lucene-spatial-extras:jar:7.7.0:compile, org.apache.lucene:lucene-spatial3d=org.apache.lucene:lucene-spatial3d:jar:7.7.0:compile, org.apache.lucene:lucene-suggest=org.apache.lucene:lucene-suggest:jar:7.7.0:compile, org.elasticsearch:elasticsearch-cli=org.elasticsearch:elasticsearch-cli:jar:6.7.2:compile, net.sf.jopt-simple:jopt-simple=net.sf.jopt-simple:jopt-simple:jar:5.0.2:compile, com.carrotsearch:hppc=com.carrotsearch:hppc:jar:0.7.1:compile, com.tdunning:t-digest=com.tdunning:t-digest:jar:3.2:compile, org.hdrhistogram:HdrHistogram=org.hdrhistogram:HdrHistogram:jar:2.1.9:compile, org.elasticsearch:jna=org.elasticsearch:jna:jar:4.5.1:compile, org.elasticsearch.client:elasticsearch-rest-client=org.elasticsearch.client:elasticsearch-rest-client:jar:6.7.2:compile, org.apache.httpcomponents:httpasyncclient=org.apache.httpcomponents:httpasyncclient:jar:4.1.2:compile, org.apache.httpcomponents:httpcore-nio=org.apache.httpcomponents:httpcore-nio:jar:4.4.5:compile, org.elasticsearch.plugin:parent-join-client=org.elasticsearch.plugin:parent-join-client:jar:6.7.2:compile, org.elasticsearch.plugin:aggs-matrix-stats-client=org.elasticsearch.plugin:aggs-matrix-stats-client:jar:6.7.2:compile, org.elasticsearch.plugin:rank-eval-client=org.elasticsearch.plugin:rank-eval-client:jar:6.7.2:compile, org.elasticsearch.plugin:lang-mustache-client=org.elasticsearch.plugin:lang-mustache-client:jar:6.7.2:compile, com.github.spullara.mustache.java:compiler=com.github.spullara.mustache.java:compiler:jar:0.9.3:compile, org.slf4j:jcl-over-slf4j=org.slf4j:jcl-over-slf4j:jar:1.7.29:runtime, org.slf4j:log4j-over-slf4j=org.slf4j:log4j-over-slf4j:jar:1.7.29:runtime, com.squareup.okhttp3:okhttp=com.squareup.okhttp3:okhttp:jar:3.14.1:compile, com.squareup.okio:okio=com.squareup.okio:okio:jar:1.17.2:compile, com.squareup.okhttp3:logging-interceptor=com.squareup.okhttp3:logging-interceptor:jar:4.2.2:compile, org.apache.logging.log4j:log4j-to-slf4j=org.apache.logging.log4j:log4j-to-slf4j:jar:2.14.1:runtime, org.apache.logging.log4j:log4j-api=org.apache.logging.log4j:log4j-api:jar:2.14.1:runtime, org.apache.commons:commons-csv=org.apache.commons:commons-csv:jar:1.5:compile, org.dataconservancy.pass:nihms-pass-client=org.dataconservancy.pass:nihms-pass-client:jar:1.4.1-SNAPSHOT:compile, args4j:args4j=args4j:args4j:jar:2.33:compile, org.slf4j:slf4j-api=org.slf4j:slf4j-api:jar:1.7.25:compile, junit:junit=junit:junit:jar:4.12:test, org.hamcrest:hamcrest-core=org.hamcrest:hamcrest-core:jar:1.3:test, org.mockito:mockito-all=org.mockito:mockito-all:jar:1.9.5:test, ch.qos.logback:logback-classic=ch.qos.logback:logback-classic:jar:1.2.3:test, ch.qos.logback:logback-core=ch.qos.logback:logback-core:jar:1.2.3:test}
[DEBUG] (s) projectBuildDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target
[DEBUG] (s) redirectTestOutputToFile = false
[DEBUG] (s) remoteRepositories = [ id: central
url: https://repo.maven.apache.org/maven2
layout: default
snapshots: [enabled => false, update => daily]
releases: [enabled => true, update => never]
]
[DEBUG] (s) reportFormat = brief
[DEBUG] (s) reportsDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/surefire-reports
[DEBUG] (f) rerunFailingTestsCount = 0
[DEBUG] (f) reuseForks = true
[DEBUG] (s) runOrder = filesystem
[DEBUG] (f) shutdown = testset
[DEBUG] (s) skip = false
[DEBUG] (f) skipAfterFailureCount = 0
[DEBUG] (s) skipTests = false
[DEBUG] (s) suiteXmlFiles = []
[DEBUG] (s) tempDir = surefire
[DEBUG] (s) testClassesDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/test-classes
[DEBUG] (s) testFailureIgnore = false
[DEBUG] (s) testNGArtifactName = org.testng:testng
[DEBUG] (s) testSourceDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/java
[DEBUG] (s) threadCountClasses = 0
[DEBUG] (s) threadCountMethods = 0
[DEBUG] (s) threadCountSuites = 0
[DEBUG] (s) trimStackTrace = true
[DEBUG] (s) useFile = true
[DEBUG] (s) useManifestOnlyJar = true
[DEBUG] (s) useSystemClassLoader = true
[DEBUG] (s) useUnlimitedThreads = false
[DEBUG] (s) workingDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration
[DEBUG] (s) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (s) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] -- end configuration --
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=74, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=28, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1, ConflictResolver.conflictItemCount=70, DefaultDependencyCollector.collectTime=16, DefaultDependencyCollector.transformTime=1}
[DEBUG] org.apache.maven.plugins:maven-jar-plugin:jar:2.4:
[DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-project:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-settings:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-profile:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.6:compile
[DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile
[DEBUG] junit:junit:jar:3.8.1:compile
[DEBUG] classworlds:classworlds:jar:1.1-alpha-2:compile
[DEBUG] org.apache.maven:maven-model:jar:2.0.6:runtime
[DEBUG] org.apache.maven:maven-artifact:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-archiver:jar:2.5:compile
[DEBUG] org.apache.maven:maven-core:jar:2.0.6:compile
[DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.6:compile
[DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.0.6:compile
[DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7:compile
[DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.6:compile
[DEBUG] commons-cli:commons-cli:jar:1.0:compile
[DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.6:compile
[DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile
[DEBUG] org.apache.maven:maven-monitor:jar:2.0.6:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.15:compile
[DEBUG] org.codehaus.plexus:plexus-archiver:jar:2.1:compile
[DEBUG] org.codehaus.plexus:plexus-io:jar:2.0.2:compile
[DEBUG] commons-lang:commons-lang:jar:2.1:compile
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0:compile
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-jar-plugin:2.4
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-jar-plugin:2.4
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-jar-plugin:2.4
[DEBUG] Included: org.apache.maven.plugins:maven-jar-plugin:jar:2.4
[DEBUG] Included: junit:junit:jar:3.8.1
[DEBUG] Included: org.apache.maven:maven-archiver:jar:2.5
[DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.0.6
[DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7
[DEBUG] Included: commons-cli:commons-cli:jar:1.0
[DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.15
[DEBUG] Included: org.codehaus.plexus:plexus-archiver:jar:2.1
[DEBUG] Included: org.codehaus.plexus:plexus-io:jar:2.0.2
[DEBUG] Included: commons-lang:commons-lang:jar:2.1
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-jar-plugin:2.4:jar from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-jar-plugin:2.4, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-jar-plugin:2.4:jar' with basic configurator -->
[DEBUG] (f) classesDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes
[DEBUG] (f) defaultManifestFile = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes/META-INF/MANIFEST.MF
[DEBUG] (f) finalName = nihms-etl-integration-1.4.1-SNAPSHOT
[DEBUG] (f) forceCreation = false
[DEBUG] (f) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) skipIfEmpty = false
[DEBUG] (f) useDefaultManifestFile = false
[DEBUG] -- end configuration --
[WARNING] JAR will be empty - no content was marked for inclusion!
[DEBUG] isUp2date: true
[DEBUG] Archive /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/nihms-etl-integration-1.4.1-SNAPSHOT.jar is uptodate.
[INFO]
[INFO] >>> maven-source-plugin:3.0.1:jar (default) > generate-sources @ nihms-etl-integration >>>
[INFO]
[INFO] <<< maven-source-plugin:3.0.1:jar (default) < generate-sources @ nihms-etl-integration <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:3.0.1:jar (default) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=83, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=31, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=1, ConflictResolver.conflictItemCount=76, DefaultDependencyCollector.collectTime=27, DefaultDependencyCollector.transformTime=1}
[DEBUG] org.apache.maven.plugins:maven-source-plugin:jar:3.0.1:
[DEBUG] org.apache.maven:maven-model:jar:3.0:compile
[DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile
[DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile
[DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile
[DEBUG] org.apache.maven:maven-core:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime
[DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile
[DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile
[DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.6:compile
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile
[DEBUG] org.apache.maven:maven-archiver:jar:3.1.1:compile
[DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.0.1:compile
[DEBUG] commons-io:commons-io:jar:2.5:compile
[DEBUG] org.codehaus.plexus:plexus-archiver:jar:3.4:compile
[DEBUG] org.codehaus.plexus:plexus-io:jar:2.7.1:compile
[DEBUG] org.apache.commons:commons-compress:jar:1.11:compile
[DEBUG] org.iq80.snappy:snappy:jar:0.4:compile
[DEBUG] org.tukaani:xz:jar:1.5:runtime
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-source-plugin:3.0.1
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-source-plugin:3.0.1
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-source-plugin:3.0.1
[DEBUG] Included: org.apache.maven.plugins:maven-source-plugin:jar:3.0.1
[DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2
[DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7
[DEBUG] Included: org.apache.maven:maven-aether-provider:jar:3.0
[DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14
[DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.6
[DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3
[DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG] Included: org.apache.maven:maven-archiver:jar:3.1.1
[DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.0.1
[DEBUG] Included: commons-io:commons-io:jar:2.5
[DEBUG] Included: org.codehaus.plexus:plexus-archiver:jar:3.4
[DEBUG] Included: org.codehaus.plexus:plexus-io:jar:2.7.1
[DEBUG] Included: org.apache.commons:commons-compress:jar:1.11
[DEBUG] Included: org.iq80.snappy:snappy:jar:0.4
[DEBUG] Included: org.tukaani:xz:jar:1.5
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-source-plugin:3.0.1:jar from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-source-plugin:3.0.1, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-source-plugin:3.0.1:jar' with basic configurator -->
[DEBUG] (f) attach = true
[DEBUG] (f) classifier = sources
[DEBUG] (f) defaultManifestFile = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes/META-INF/MANIFEST.MF
[DEBUG] (f) excludeResources = false
[DEBUG] (f) finalName = nihms-etl-integration-1.4.1-SNAPSHOT
[DEBUG] (f) forceCreation = false
[DEBUG] (f) includePom = false
[DEBUG] (f) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (f) reactorProjects = [MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml]
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) skipSource = false
[DEBUG] (f) useDefaultExcludes = true
[DEBUG] (f) useDefaultManifestFile = false
[DEBUG] -- end configuration --
[INFO] No sources in project. Archive not created.
[INFO]
[INFO] --- maven-javadoc-plugin:3.0.1:jar (attach-javadocs) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=234, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=1, ConflictIdSorter.conflictIdCount=81, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2, ConflictResolver.conflictItemCount=187, DefaultDependencyCollector.collectTime=113, DefaultDependencyCollector.transformTime=3}
[DEBUG] org.apache.maven.plugins:maven-javadoc-plugin:jar:3.0.1:
[DEBUG] org.apache.maven:maven-core:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime
[DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile
[DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.14:compile
[DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile
[DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.7.1:compile
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile
[DEBUG] org.apache.maven:maven-model:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings:jar:3.0:compile
[DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile
[DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile
[DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:3.0:compile
[DEBUG] org.apache.maven:maven-archiver:jar:3.2.0:compile
[DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.2.0:compile
[DEBUG] org.apache.maven.shared:maven-invoker:jar:3.0.0:compile
[DEBUG] org.apache.maven.shared:maven-common-artifact-filters:jar:3.0.0:compile
[DEBUG] org.apache.maven.shared:maven-artifact-transfer:jar:0.9.1:compile
[DEBUG] commons-codec:commons-codec:jar:1.6:compile
[DEBUG] org.slf4j:slf4j-api:jar:1.7.5:compile
[DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.7:compile
[DEBUG] org.apache.maven.doxia:doxia-logging-api:jar:1.7:compile
[DEBUG] org.apache.maven.doxia:doxia-site-renderer:jar:1.7.4:compile
[DEBUG] org.apache.maven.doxia:doxia-core:jar:1.7:compile
[DEBUG] xmlunit:xmlunit:jar:1.5:compile
[DEBUG] org.apache.maven.doxia:doxia-decoration-model:jar:1.7.4:compile
[DEBUG] org.apache.maven.doxia:doxia-skin-model:jar:1.7.4:compile
[DEBUG] org.apache.maven.doxia:doxia-module-xhtml:jar:1.7:compile
[DEBUG] org.codehaus.plexus:plexus-i18n:jar:1.0-beta-7:compile
[DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-30:compile
[DEBUG] junit:junit:jar:3.8.1:compile
[DEBUG] org.codehaus.plexus:plexus-velocity:jar:1.2:compile
[DEBUG] org.apache.velocity:velocity:jar:1.7:compile
[DEBUG] org.apache.velocity:velocity-tools:jar:2.0:compile
[DEBUG] commons-beanutils:commons-beanutils:jar:1.7.0:compile
[DEBUG] commons-digester:commons-digester:jar:1.8:compile
[DEBUG] commons-chain:commons-chain:jar:1.1:compile
[DEBUG] commons-validator:commons-validator:jar:1.3.1:compile
[DEBUG] dom4j:dom4j:jar:1.1:compile
[DEBUG] oro:oro:jar:2.0.8:compile
[DEBUG] sslext:sslext:jar:1.2-0:compile
[DEBUG] org.apache.struts:struts-core:jar:1.3.8:compile
[DEBUG] antlr:antlr:jar:2.7.2:compile
[DEBUG] org.apache.struts:struts-taglib:jar:1.3.8:compile
[DEBUG] org.apache.struts:struts-tiles:jar:1.3.8:compile
[DEBUG] commons-collections:commons-collections:jar:3.2.1:compile
[DEBUG] commons-lang:commons-lang:jar:2.4:compile
[DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:1.0-beta-6:compile
[DEBUG] org.apache.commons:commons-lang3:jar:3.5:compile
[DEBUG] commons-io:commons-io:jar:2.5:compile
[DEBUG] org.apache.httpcomponents:httpclient:jar:4.5.2:compile
[DEBUG] org.apache.httpcomponents:httpcore:jar:4.4.4:compile
[DEBUG] commons-logging:commons-logging:jar:1.2:compile
[DEBUG] com.thoughtworks.qdox:qdox:jar:2.0-M7:compile
[DEBUG] org.codehaus.plexus:plexus-java:jar:0.9.8:compile
[DEBUG] org.ow2.asm:asm:jar:6.1.1:compile
[DEBUG] org.codehaus.plexus:plexus-archiver:jar:3.6.0:compile
[DEBUG] org.codehaus.plexus:plexus-io:jar:3.0.1:compile
[DEBUG] org.apache.commons:commons-compress:jar:1.16.1:compile
[DEBUG] org.objenesis:objenesis:jar:2.6:compile
[DEBUG] org.iq80.snappy:snappy:jar:0.4:compile
[DEBUG] org.tukaani:xz:jar:1.8:runtime
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.24:compile
[DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-6:compile
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-javadoc-plugin:3.0.1
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-javadoc-plugin:3.0.1
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-javadoc-plugin:3.0.1
[DEBUG] Included: org.apache.maven.plugins:maven-javadoc-plugin:jar:3.0.1
[DEBUG] Included: org.apache.maven:maven-aether-provider:jar:3.0
[DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7
[DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2
[DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.14
[DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.7.1
[DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3
[DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:3.0
[DEBUG] Included: org.apache.maven:maven-archiver:jar:3.2.0
[DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.2.0
[DEBUG] Included: org.apache.maven.shared:maven-invoker:jar:3.0.0
[DEBUG] Included: org.apache.maven.shared:maven-common-artifact-filters:jar:3.0.0
[DEBUG] Included: org.apache.maven.shared:maven-artifact-transfer:jar:0.9.1
[DEBUG] Included: commons-codec:commons-codec:jar:1.6
[DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.7
[DEBUG] Included: org.apache.maven.doxia:doxia-logging-api:jar:1.7
[DEBUG] Included: org.apache.maven.doxia:doxia-site-renderer:jar:1.7.4
[DEBUG] Included: org.apache.maven.doxia:doxia-core:jar:1.7
[DEBUG] Included: xmlunit:xmlunit:jar:1.5
[DEBUG] Included: org.apache.maven.doxia:doxia-decoration-model:jar:1.7.4
[DEBUG] Included: org.apache.maven.doxia:doxia-skin-model:jar:1.7.4
[DEBUG] Included: org.apache.maven.doxia:doxia-module-xhtml:jar:1.7
[DEBUG] Included: org.codehaus.plexus:plexus-i18n:jar:1.0-beta-7
[DEBUG] Included: junit:junit:jar:3.8.1
[DEBUG] Included: org.codehaus.plexus:plexus-velocity:jar:1.2
[DEBUG] Included: org.apache.velocity:velocity:jar:1.7
[DEBUG] Included: org.apache.velocity:velocity-tools:jar:2.0
[DEBUG] Included: commons-beanutils:commons-beanutils:jar:1.7.0
[DEBUG] Included: commons-digester:commons-digester:jar:1.8
[DEBUG] Included: commons-chain:commons-chain:jar:1.1
[DEBUG] Included: commons-validator:commons-validator:jar:1.3.1
[DEBUG] Included: dom4j:dom4j:jar:1.1
[DEBUG] Included: oro:oro:jar:2.0.8
[DEBUG] Included: sslext:sslext:jar:1.2-0
[DEBUG] Included: org.apache.struts:struts-core:jar:1.3.8
[DEBUG] Included: antlr:antlr:jar:2.7.2
[DEBUG] Included: org.apache.struts:struts-taglib:jar:1.3.8
[DEBUG] Included: org.apache.struts:struts-tiles:jar:1.3.8
[DEBUG] Included: commons-collections:commons-collections:jar:3.2.1
[DEBUG] Included: commons-lang:commons-lang:jar:2.4
[DEBUG] Included: org.apache.commons:commons-lang3:jar:3.5
[DEBUG] Included: commons-io:commons-io:jar:2.5
[DEBUG] Included: org.apache.httpcomponents:httpclient:jar:4.5.2
[DEBUG] Included: org.apache.httpcomponents:httpcore:jar:4.4.4
[DEBUG] Included: commons-logging:commons-logging:jar:1.2
[DEBUG] Included: com.thoughtworks.qdox:qdox:jar:2.0-M7
[DEBUG] Included: org.codehaus.plexus:plexus-java:jar:0.9.8
[DEBUG] Included: org.ow2.asm:asm:jar:6.1.1
[DEBUG] Included: org.codehaus.plexus:plexus-archiver:jar:3.6.0
[DEBUG] Included: org.codehaus.plexus:plexus-io:jar:3.0.1
[DEBUG] Included: org.apache.commons:commons-compress:jar:1.16.1
[DEBUG] Included: org.objenesis:objenesis:jar:2.6
[DEBUG] Included: org.iq80.snappy:snappy:jar:0.4
[DEBUG] Included: org.tukaani:xz:jar:1.8
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0.24
[DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-6
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-javadoc-plugin:3.0.1:jar from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-javadoc-plugin:3.0.1, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-javadoc-plugin:3.0.1:jar' with basic configurator -->
[DEBUG] (f) applyJavadocSecurityFix = true
[DEBUG] (f) attach = true
[DEBUG] (f) author = true
[DEBUG] (f) bootclasspathArtifacts = []
[DEBUG] (f) bottom = Copyright &#169; {inceptionYear}&#x2013;{currentYear} {organizationName}. All rights reserved.
[DEBUG] (f) breakiterator = false
[DEBUG] (f) classifier = javadoc
[DEBUG] (f) debug = false
[DEBUG] (f) defaultManifestFile = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/classes/META-INF/MANIFEST.MF
[DEBUG] (f) detectJavaApiLink = true
[DEBUG] (f) detectLinks = false
[DEBUG] (f) detectOfflineLinks = true
[DEBUG] (f) docfilessubdirs = false
[DEBUG] (f) docletArtifact = groupId = 'null'
artifactId = 'null'
version = 'null'
[DEBUG] (f) docletArtifacts = []
[DEBUG] (f) doctitle = NIHMS ELT Integration Tests 1.4.1-SNAPSHOT API
[DEBUG] (f) encoding = UTF-8
[DEBUG] (f) failOnError = true
[DEBUG] (f) failOnWarnings = false
[DEBUG] (f) finalName = nihms-etl-integration-1.4.1-SNAPSHOT
[DEBUG] (f) groups = []
[DEBUG] (f) includeDependencySources = false
[DEBUG] (f) includeTransitiveDependencySources = false
[DEBUG] (f) isOffline = false
[DEBUG] (f) jarOutputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target
[DEBUG] (f) javaApiLinks = {}
[DEBUG] (f) javadocDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/main/javadoc
[DEBUG] (f) javadocOptionsDir = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/javadoc-bundle-options
[DEBUG] (f) keywords = false
[DEBUG] (f) links = []
[DEBUG] (f) linksource = false
[DEBUG] (f) localRepository = id: local
url: file:///Users/esm/.m2/repository/
layout: default
snapshots: [enabled => true, update => always]
releases: [enabled => true, update => always]
[DEBUG] (f) mojo = org.apache.maven.plugins:maven-javadoc-plugin:3.0.1:jar {execution: attach-javadocs}
[DEBUG] (f) nocomment = false
[DEBUG] (f) nodeprecated = false
[DEBUG] (f) nodeprecatedlist = false
[DEBUG] (f) nohelp = false
[DEBUG] (f) noindex = false
[DEBUG] (f) nonavbar = false
[DEBUG] (f) nooverview = false
[DEBUG] (f) nosince = false
[DEBUG] (f) notimestamp = false
[DEBUG] (f) notree = false
[DEBUG] (f) offlineLinks = []
[DEBUG] (f) old = false
[DEBUG] (f) outputDirectory = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/apidocs
[DEBUG] (f) overview = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/main/javadoc/overview.html
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (f) quiet = false
[DEBUG] (f) reactorProjects = [MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml]
[DEBUG] (f) resourcesArtifacts = []
[DEBUG] (f) serialwarn = false
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) settings = org.apache.maven.execution.SettingsAdapter@2aaf152b
[DEBUG] (f) show = protected
[DEBUG] (f) skip = false
[DEBUG] (f) sourceDependencyCacheDir = /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/target/distro-javadoc-sources
[DEBUG] (f) splitindex = false
[DEBUG] (f) stylesheet = java
[DEBUG] (f) tagletArtifact = groupId = 'null'
artifactId = 'null'
version = 'null'
[DEBUG] (f) tagletArtifacts = []
[DEBUG] (f) taglets = []
[DEBUG] (f) tags = []
[DEBUG] (f) use = true
[DEBUG] (f) useDefaultManifestFile = false
[DEBUG] (f) useStandardDocletOptions = true
[DEBUG] (f) validateLinks = false
[DEBUG] (f) verbose = false
[DEBUG] (f) version = true
[DEBUG] (f) windowtitle = NIHMS ELT Integration Tests 1.4.1-SNAPSHOT API
[DEBUG] -- end configuration --
[INFO]
[INFO] --- docker-maven-plugin:0.30.0:start (start-docker-its) @ nihms-etl-integration ---
[DEBUG] Dependency collection stats: {ConflictMarker.analyzeTime=0, ConflictMarker.markTime=0, ConflictMarker.nodeCount=185, ConflictIdSorter.graphTime=0, ConflictIdSorter.topsortTime=0, ConflictIdSorter.conflictIdCount=72, ConflictIdSorter.conflictIdCycleCount=0, ConflictResolver.totalTime=2, ConflictResolver.conflictItemCount=166, DefaultDependencyCollector.collectTime=70, DefaultDependencyCollector.transformTime=2}
[DEBUG] io.fabric8:docker-maven-plugin:jar:0.30.0:
[DEBUG] org.apache.httpcomponents:httpclient:jar:4.5.5:compile
[DEBUG] org.apache.httpcomponents:httpcore:jar:4.4.9:compile
[DEBUG] commons-logging:commons-logging:jar:1.2:compile
[DEBUG] commons-codec:commons-codec:jar:1.10:compile
[DEBUG] com.github.jnr:jnr-unixsocket:jar:0.22:compile
[DEBUG] com.github.jnr:jnr-ffi:jar:2.1.9:compile
[DEBUG] com.github.jnr:jffi:jar:1.2.17:compile
[DEBUG] com.github.jnr:jffi:jar:native:1.2.16:runtime
[DEBUG] org.ow2.asm:asm:jar:5.0.3:compile
[DEBUG] org.ow2.asm:asm-commons:jar:5.0.3:compile
[DEBUG] org.ow2.asm:asm-analysis:jar:5.0.3:compile
[DEBUG] org.ow2.asm:asm-tree:jar:5.0.3:compile
[DEBUG] org.ow2.asm:asm-util:jar:5.0.3:compile
[DEBUG] com.github.jnr:jnr-a64asm:jar:1.0.0:compile
[DEBUG] com.github.jnr:jnr-x86asm:jar:1.0.2:compile
[DEBUG] com.github.jnr:jnr-constants:jar:0.9.11:compile
[DEBUG] com.github.jnr:jnr-enxio:jar:0.20:compile
[DEBUG] com.github.jnr:jnr-posix:jar:3.0.47:compile
[DEBUG] org.apache.commons:commons-lang3:jar:3.6:compile
[DEBUG] org.apache.commons:commons-text:jar:1.1:compile
[DEBUG] com.google.code.gson:gson:jar:2.8.5:compile
[DEBUG] org.fusesource.jansi:jansi:jar:1.16:compile
[DEBUG] org.bouncycastle:bcpkix-jdk15on:jar:1.57:compile
[DEBUG] org.bouncycastle:bcprov-jdk15on:jar:1.57:compile
[DEBUG] org.apache.maven.plugins:maven-assembly-plugin:jar:3.1.0:compile
[DEBUG] org.apache.maven:maven-plugin-api:jar:3.0:compile
[DEBUG] org.sonatype.sisu:sisu-inject-plexus:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-inject-bean:jar:1.4.2:compile
[DEBUG] org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7:compile
[DEBUG] org.apache.maven:maven-core:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings:jar:3.0:compile
[DEBUG] org.apache.maven:maven-settings-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-repository-metadata:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model-builder:jar:3.0:compile
[DEBUG] org.apache.maven:maven-aether-provider:jar:3.0:runtime
[DEBUG] org.sonatype.aether:aether-impl:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-spi:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-api:jar:1.7:compile
[DEBUG] org.sonatype.aether:aether-util:jar:1.7:compile
[DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.2.3:compile
[DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:compile
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:compile
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:compile
[DEBUG] org.apache.maven:maven-artifact:jar:3.0:compile
[DEBUG] org.apache.maven:maven-model:jar:3.0:compile
[DEBUG] org.apache.maven.shared:maven-common-artifact-filters:jar:3.0.1:compile
[DEBUG] org.apache.maven.shared:maven-shared-utils:jar:3.1.0:compile
[DEBUG] org.apache.maven.shared:maven-artifact-transfer:jar:0.9.0:compile
[DEBUG] org.slf4j:slf4j-api:jar:1.7.5:compile
[DEBUG] org.codehaus.plexus:plexus-archiver:jar:3.5:compile
[DEBUG] org.apache.commons:commons-compress:jar:1.14:compile
[DEBUG] org.iq80.snappy:snappy:jar:0.4:compile
[DEBUG] org.tukaani:xz:jar:1.6:runtime
[DEBUG] org.apache.maven.shared:file-management:jar:3.0.0:compile
[DEBUG] org.apache.maven.shared:maven-shared-io:jar:3.0.0:compile
[DEBUG] org.apache.maven:maven-compat:jar:3.0:compile
[DEBUG] org.apache.maven.wagon:wagon-provider-api:jar:2.10:compile
[DEBUG] commons-io:commons-io:jar:2.5:compile
[DEBUG] org.apache.maven.shared:maven-filtering:jar:3.1.1:compile
[DEBUG] org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile
[DEBUG] org.codehaus.plexus:plexus-io:jar:3.0.0:compile
[DEBUG] org.apache.maven:maven-archiver:jar:3.2.0:compile
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.1.0:compile
[DEBUG] joda-time:joda-time:jar:2.9.9:compile
[DEBUG] org.yaml:snakeyaml:jar:1.18:compile
[DEBUG] com.google.guava:guava:jar:23.0-android:compile
[DEBUG] com.google.code.findbugs:jsr305:jar:1.3.9:compile
[DEBUG] com.google.errorprone:error_prone_annotations:jar:2.0.18:compile
[DEBUG] com.google.j2objc:j2objc-annotations:jar:1.1:compile
[DEBUG] org.codehaus.mojo:animal-sniffer-annotations:jar:1.14:compile
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.24:compile
[DEBUG] Created new class realm plugin>io.fabric8:docker-maven-plugin:0.30.0
[DEBUG] Importing foreign packages into class realm plugin>io.fabric8:docker-maven-plugin:0.30.0
[DEBUG] Imported: < maven.api
[DEBUG] Populating class realm plugin>io.fabric8:docker-maven-plugin:0.30.0
[DEBUG] Included: io.fabric8:docker-maven-plugin:jar:0.30.0
[DEBUG] Included: org.apache.httpcomponents:httpclient:jar:4.5.5
[DEBUG] Included: org.apache.httpcomponents:httpcore:jar:4.4.9
[DEBUG] Included: commons-logging:commons-logging:jar:1.2
[DEBUG] Included: commons-codec:commons-codec:jar:1.10
[DEBUG] Included: com.github.jnr:jnr-unixsocket:jar:0.22
[DEBUG] Included: com.github.jnr:jnr-ffi:jar:2.1.9
[DEBUG] Included: com.github.jnr:jffi:jar:1.2.17
[DEBUG] Included: com.github.jnr:jffi:jar:native:1.2.16
[DEBUG] Included: org.ow2.asm:asm:jar:5.0.3
[DEBUG] Included: org.ow2.asm:asm-commons:jar:5.0.3
[DEBUG] Included: org.ow2.asm:asm-analysis:jar:5.0.3
[DEBUG] Included: org.ow2.asm:asm-tree:jar:5.0.3
[DEBUG] Included: org.ow2.asm:asm-util:jar:5.0.3
[DEBUG] Included: com.github.jnr:jnr-a64asm:jar:1.0.0
[DEBUG] Included: com.github.jnr:jnr-x86asm:jar:1.0.2
[DEBUG] Included: com.github.jnr:jnr-constants:jar:0.9.11
[DEBUG] Included: com.github.jnr:jnr-enxio:jar:0.20
[DEBUG] Included: com.github.jnr:jnr-posix:jar:3.0.47
[DEBUG] Included: org.apache.commons:commons-lang3:jar:3.6
[DEBUG] Included: org.apache.commons:commons-text:jar:1.1
[DEBUG] Included: com.google.code.gson:gson:jar:2.8.5
[DEBUG] Included: org.bouncycastle:bcpkix-jdk15on:jar:1.57
[DEBUG] Included: org.bouncycastle:bcprov-jdk15on:jar:1.57
[DEBUG] Included: org.apache.maven.plugins:maven-assembly-plugin:jar:3.1.0
[DEBUG] Included: org.sonatype.sisu:sisu-inject-bean:jar:1.4.2
[DEBUG] Included: org.sonatype.sisu:sisu-guice:jar:noaop:2.1.7
[DEBUG] Included: org.apache.maven:maven-aether-provider:jar:3.0
[DEBUG] Included: org.sonatype.aether:aether-util:jar:1.7
[DEBUG] Included: org.codehaus.plexus:plexus-component-annotations:jar:1.5.5
[DEBUG] Included: org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3
[DEBUG] Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG] Included: org.apache.maven.shared:maven-common-artifact-filters:jar:3.0.1
[DEBUG] Included: org.apache.maven.shared:maven-shared-utils:jar:3.1.0
[DEBUG] Included: org.apache.maven.shared:maven-artifact-transfer:jar:0.9.0
[DEBUG] Included: org.codehaus.plexus:plexus-archiver:jar:3.5
[DEBUG] Included: org.apache.commons:commons-compress:jar:1.14
[DEBUG] Included: org.iq80.snappy:snappy:jar:0.4
[DEBUG] Included: org.tukaani:xz:jar:1.6
[DEBUG] Included: org.apache.maven.shared:file-management:jar:3.0.0
[DEBUG] Included: org.apache.maven.shared:maven-shared-io:jar:3.0.0
[DEBUG] Included: commons-io:commons-io:jar:2.5
[DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:3.1.1
[DEBUG] Included: org.sonatype.plexus:plexus-build-api:jar:0.0.7
[DEBUG] Included: org.codehaus.plexus:plexus-io:jar:3.0.0
[DEBUG] Included: org.apache.maven:maven-archiver:jar:3.2.0
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.1.0
[DEBUG] Included: joda-time:joda-time:jar:2.9.9
[DEBUG] Included: org.yaml:snakeyaml:jar:1.18
[DEBUG] Included: com.google.guava:guava:jar:23.0-android
[DEBUG] Included: com.google.code.findbugs:jsr305:jar:1.3.9
[DEBUG] Included: com.google.errorprone:error_prone_annotations:jar:2.0.18
[DEBUG] Included: com.google.j2objc:j2objc-annotations:jar:1.1
[DEBUG] Included: org.codehaus.mojo:animal-sniffer-annotations:jar:1.14
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.24
[DEBUG] Configuring mojo io.fabric8:docker-maven-plugin:0.30.0:start from plugin realm ClassRealm[plugin>io.fabric8:docker-maven-plugin:0.30.0, parent: sun.misc.Launcher$AppClassLoader@5c647e05]
[DEBUG] Configuring mojo 'io.fabric8:docker-maven-plugin:0.30.0:start' with basic configurator -->
[DEBUG] (f) apiVersion = 1.24
[DEBUG] (f) autoCreateCustomNetworks = true
[DEBUG] (f) execution = io.fabric8:docker-maven-plugin:0.30.0:start {execution: start-docker-its}
[DEBUG] (s) name = oapass/fcrepo:4.7.5-3.2-5
[DEBUG] (f) hostname = fcrepo
[DEBUG] (f) env = {COMPACTION_PRELOAD_FILE_PASS_STATIC=/usr/local/tomcat/lib/context-3.1.jsonld, COMPACTION_PRELOAD_URI_PASS_STATIC=https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld, COMPACTION_URI=https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld, FCREPO_ACTIVEMQ_CONFIGURATION=classpath:/activemq-queue.xml, FCREPO_HOST=fcrepo, FCREPO_JMS_BASEURL=http://${docker.host.address}:54802/fcrepo/rest, FCREPO_JMS_PORT=54804, FCREPO_PORT=54802, FCREPO_STOMP_PORT=54805}
[DEBUG] (f) ports = [54802:54802]
[DEBUG] (f) mode = custom
[DEBUG] (f) name = pass
[DEBUG] (s) alias = fcrepo
[DEBUG] (s) alias = localhost
[DEBUG] (f) network = io.fabric8.maven.docker.config.NetworkConfig@5a13fcf3
[DEBUG] (f) bind = [./src/test/resources/docker/mnt:/mnt]
[DEBUG] (f) volumes = io.fabric8.maven.docker.config.RunVolumeConfiguration@4ef2ab73
[DEBUG] (f) url = http://fedoraAdmin:moo@${docker.host.address}:54802/fcrepo/rest
[DEBUG] (f) http = io.fabric8.maven.docker.config.WaitConfiguration$HttpConfiguration@34208baa
[DEBUG] (f) time = 120000
[DEBUG] (f) wait = io.fabric8.maven.docker.config.WaitConfiguration@71370fec
[DEBUG] (f) run = io.fabric8.maven.docker.config.RunImageConfiguration@6707a4bf
[DEBUG] (s) name = oapass/indexer@sha256:e51092a9d433219d52207f1ec3f5ea7c652d51f516bcbe9434dae556b921546d
[DEBUG] (f) env = {PI_ES_BASE=http://elasticsearch:9200/, PI_ES_CONFIG=/app/esconfig-3.4.json, PI_ES_INDEX=http://elasticsearch:9200/pass/, PI_FEDORA_INTERNAL_BASE=http://fcrepo:54802/fcrepo/rest/, PI_FEDORA_JMS_BROKER=tcp://fcrepo:54804, PI_FEDORA_JMS_QUEUE=fedora, PI_FEDORA_PASS=moo, PI_FEDORA_USER=fedoraAdmin, PI_LOG_LEVEL=debug, PI_TYPE_PREFIX=http://oapass.org/ns/pass#}
[DEBUG] (f) links = [fcrepo:localhost, elasticsearch]
[DEBUG] (f) bind = [./src/test/resources/docker/hosts:/etc/hosts]
[DEBUG] (f) volumes = io.fabric8.maven.docker.config.RunVolumeConfiguration@3fc7c734
[DEBUG] (f) mode = custom
[DEBUG] (f) name = pass
[DEBUG] (s) alias = indexer
[DEBUG] (f) network = io.fabric8.maven.docker.config.NetworkConfig@f0a66bd
[DEBUG] (f) run = io.fabric8.maven.docker.config.RunImageConfiguration@460b50df
[DEBUG] (s) name = docker.elastic.co/elasticsearch/elasticsearch-oss:6.2.3
[DEBUG] (f) env = {ES_JAVA_OPTS=-Xms512m -Xmx512m, bootstrap.memory_lock=true, discovery.type=single-node}
[DEBUG] (f) ports = [54803:9200]
[DEBUG] (f) mode = custom
[DEBUG] (f) name = pass
[DEBUG] (s) alias = elasticsearch
[DEBUG] (f) network = io.fabric8.maven.docker.config.NetworkConfig@1cf336fd
[DEBUG] (f) url = http://${docker.host.address}:54803/
[DEBUG] (f) http = io.fabric8.maven.docker.config.WaitConfiguration$HttpConfiguration@1d0cac30
[DEBUG] (f) time = 120000
[DEBUG] (f) wait = io.fabric8.maven.docker.config.WaitConfiguration@41ef1ea2
[DEBUG] (f) run = io.fabric8.maven.docker.config.RunImageConfiguration@5dfe23e8
[DEBUG] (f) images = [ImageConfiguration {name='oapass/fcrepo:4.7.5-3.2-5', alias='null'}, ImageConfiguration {name='oapass/indexer@sha256:e51092a9d433219d52207f1ec3f5ea7c652d51f516bcbe9434dae556b921546d', alias='null'}, ImageConfiguration {name='docker.elastic.co/elasticsearch/elasticsearch-oss:6.2.3', alias='null'}]
[DEBUG] (f) keepContainer = false
[DEBUG] (f) logStdout = false
[DEBUG] (f) maxConnections = 100
[DEBUG] (f) project = MavenProject: org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT @ /Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/pom.xml
[DEBUG] (f) removeVolumes = false
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@23c650a3
[DEBUG] (f) settings = org.apache.maven.execution.SettingsAdapter@2aaf152b
[DEBUG] (f) skip = false
[DEBUG] (f) skipExtendedAuth = false
[DEBUG] (f) skipMachine = false
[DEBUG] (f) skipRun = false
[DEBUG] (f) startParallel = false
[DEBUG] (f) useColor = true
[DEBUG] (f) verbose = all
[DEBUG] -- end configuration --
[DEBUG] DOCKER> Network create config: {"Name":"pass"}
[INFO] DOCKER> POSTing to unix://127.0.0.1:1/v1.40/networks/create with {"Name":"pass"}
[DEBUG] DOCKER> {"Id":"6390710572a22ee15e603dbf566a51914614135336246db21ad36404c47868ba","Warning":""}
[DEBUG] DOCKER> Custom Network pass found
[DEBUG] DOCKER> Custom Network pass found
[DEBUG] DOCKER> Container create config: {"Image":"oapass/fcrepo:4.7.5-3.2-5","Hostname":"fcrepo","ExposedPorts":{"54802/tcp":{}},"Env":["FCREPO_JMS_PORT=54804","COMPACTION_URI=https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld","COMPACTION_PRELOAD_FILE_PASS_STATIC=/usr/local/tomcat/lib/context-3.1.jsonld","COMPACTION_PRELOAD_URI_PASS_STATIC=https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld","FCREPO_HOST=fcrepo","FCREPO_ACTIVEMQ_CONFIGURATION=classpath:/activemq-queue.xml","FCREPO_PORT=54802","FCREPO_JMS_BASEURL=http://localhost:54802/fcrepo/rest","FCREPO_STOMP_PORT=54805"],"Labels":{"dmp.coordinates":"org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT"},"HostConfig":{"PortBindings":{"54802/tcp":[{"HostPort":"54802"}]},"Binds":["/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/docker/mnt:/mnt"],"VolumesFrom":[],"NetworkMode":"pass"},"Volumes":{"/mnt":{}},"NetworkingConfig":{"EndpointsConfig":{"pass":{"Aliases":["fcrepo","localhost"]}}}}
[INFO] DOCKER> POSTing to unix://127.0.0.1:1/v1.40/containers/create?name=fcrepo-1 with {"Image":"oapass/fcrepo:4.7.5-3.2-5","Hostname":"fcrepo","ExposedPorts":{"54802/tcp":{}},"Env":["FCREPO_JMS_PORT=54804","COMPACTION_URI=https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld","COMPACTION_PRELOAD_FILE_PASS_STATIC=/usr/local/tomcat/lib/context-3.1.jsonld","COMPACTION_PRELOAD_URI_PASS_STATIC=https://oa-pass.github.io/pass-data-model/src/main/resources/context-3.1.jsonld","FCREPO_HOST=fcrepo","FCREPO_ACTIVEMQ_CONFIGURATION=classpath:/activemq-queue.xml","FCREPO_PORT=54802","FCREPO_JMS_BASEURL=http://localhost:54802/fcrepo/rest","FCREPO_STOMP_PORT=54805"],"Labels":{"dmp.coordinates":"org.dataconservancy.pass:nihms-etl-integration:1.4.1-SNAPSHOT"},"HostConfig":{"PortBindings":{"54802/tcp":[{"HostPort":"54802"}]},"Binds":["/Users/esm/workspaces/pass/nihms-submission-etl/nihms-etl-integration/src/test/resources/docker/mnt:/mnt"],"VolumesFrom":[],"NetworkMode":"pass"},"Volumes":{"/mnt":{}},"NetworkingConfig":{"EndpointsConfig":{"pass":{"Aliases":["fcrepo","localhost"]}}}}
[INFO] DOCKER> [oapass/fcrepo:4.7.5-3.2-5]: Start container a054b9849098
[INFO] DOCKER> [oapass/fcrepo:4.7.5-3.2-5]: Waiting on url http://fedoraAdmin:moo@localhost:54802/fcrepo/rest with method HEAD for status 200..399.
[INFO] DOCKER> [oapass/fcrepo:4.7.5-3.2-5]: Waited on url http://fedoraAdmin:moo@localhost:54802/fcrepo/rest 32892 ms
[ERROR] DOCKER> Error occurred during container startup, shutting down...
[DEBUG] DOCKER> shutdown will wait max of 0 seconds before removing container
[INFO] DOCKER> DELETEing unix://127.0.0.1:1/v1.40/containers/a054b9849098?v=0
[INFO] DOCKER> [oapass/fcrepo:4.7.5-3.2-5]: Stop and removed container a054b9849098 after 0 ms
[INFO] DOCKER> DELETEing unix://127.0.0.1:1/v1.40/networks/6390710572a2
[ERROR] DOCKER> I/O Error [Unable to retrieve container name for [fcrepo] : Premature end of chunk coded message body: closing chunk expected]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 46.775 s
[INFO] Finished at: 2021-04-15T10:42:54-04:00
[INFO] Final Memory: 44M/623M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal io.fabric8:docker-maven-plugin:0.30.0:start (start-docker-its) on project nihms-etl-integration: I/O Error: Unable to retrieve container name for [fcrepo] : Premature end of chunk coded message body: closing chunk expected -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal io.fabric8:docker-maven-plugin:0.30.0:start (start-docker-its) on project nihms-etl-integration: I/O Error
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:154)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:146)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81)
at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:51)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:309)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:194)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:107)
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:993)
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:345)
at org.apache.maven.cli.MavenCli.main(MavenCli.java:191)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229)
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415)
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356)
Caused by: org.apache.maven.plugin.MojoExecutionException: I/O Error
at io.fabric8.maven.docker.StartMojo.executeInternal(StartMojo.java:194)
at io.fabric8.maven.docker.AbstractDockerMojo.execute(AbstractDockerMojo.java:230)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:134)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:208)
... 20 more
Caused by: io.fabric8.maven.docker.access.DockerAccessException: Unable to retrieve container name for [fcrepo] : Premature end of chunk coded message body: closing chunk expected
at io.fabric8.maven.docker.access.hc.DockerAccessWithHcClient.inspectContainer(DockerAccessWithHcClient.java:355)
at io.fabric8.maven.docker.access.hc.DockerAccessWithHcClient.getContainer(DockerAccessWithHcClient.java:332)
at io.fabric8.maven.docker.service.QueryService.getContainer(QueryService.java:51)
at io.fabric8.maven.docker.service.RunService.findContainerId(RunService.java:428)
at io.fabric8.maven.docker.service.RunService.findContainerIdsForLinks(RunService.java:393)
at io.fabric8.maven.docker.service.RunService.createContainerHostConfig(RunService.java:338)
at io.fabric8.maven.docker.service.RunService.createContainerConfig(RunService.java:301)
at io.fabric8.maven.docker.service.RunService.createAndStartContainer(RunService.java:150)
at io.fabric8.maven.docker.service.helper.StartContainerExecutor.startContainers(StartContainerExecutor.java:47)
at io.fabric8.maven.docker.StartMojo.lambda$startImage$0(StartMojo.java:304)
at com.google.common.util.concurrent.TrustedListenableFutureTask$TrustedFutureInterruptibleTask.runInterruptibly(TrustedListenableFutureTask.java:117)
at com.google.common.util.concurrent.InterruptibleTask.run(InterruptibleTask.java:38)
at com.google.common.util.concurrent.TrustedListenableFutureTask.run(TrustedListenableFutureTask.java:77)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at com.google.common.util.concurrent.MoreExecutors$DirectExecutorService.execute(MoreExecutors.java:260)
at java.util.concurrent.ExecutorCompletionService.submit(ExecutorCompletionService.java:181)
at io.fabric8.maven.docker.StartMojo.startImage(StartMojo.java:298)
at io.fabric8.maven.docker.StartMojo.executeInternal(StartMojo.java:166)
... 23 more
Caused by: org.apache.http.ConnectionClosedException: Premature end of chunk coded message body: closing chunk expected
at org.apache.http.impl.io.ChunkedInputStream.getChunkSize(ChunkedInputStream.java:266)
at org.apache.http.impl.io.ChunkedInputStream.nextChunk(ChunkedInputStream.java:225)
at org.apache.http.impl.io.ChunkedInputStream.read(ChunkedInputStream.java:184)
at org.apache.http.conn.EofSensorInputStream.read(EofSensorInputStream.java:135)
at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
at java.io.InputStreamReader.read(InputStreamReader.java:184)
at java.io.Reader.read(Reader.java:140)
at org.apache.http.util.EntityUtils.toString(EntityUtils.java:227)
at org.apache.http.util.EntityUtils.toString(EntityUtils.java:308)
at io.fabric8.maven.docker.access.hc.ApacheHttpClientDelegate.getResponseMessage(ApacheHttpClientDelegate.java:87)
at io.fabric8.maven.docker.access.hc.ApacheHttpClientDelegate.access$000(ApacheHttpClientDelegate.java:20)
at io.fabric8.maven.docker.access.hc.ApacheHttpClientDelegate$BodyAndStatusResponseHandler.handleResponse(ApacheHttpClientDelegate.java:189)
at io.fabric8.maven.docker.access.hc.ApacheHttpClientDelegate$BodyAndStatusResponseHandler.handleResponse(ApacheHttpClientDelegate.java:183)
at io.fabric8.maven.docker.access.hc.ApacheHttpClientDelegate$StatusCodeCheckerResponseHandler.handleResponse(ApacheHttpClientDelegate.java:172)
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:223)
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:165)
at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:140)
at io.fabric8.maven.docker.access.hc.ApacheHttpClientDelegate.get(ApacheHttpClientDelegate.java:74)
at io.fabric8.maven.docker.access.hc.DockerAccessWithHcClient.inspectContainer(DockerAccessWithHcClient.java:353)
... 41 more
[ERROR]
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
esm:~/workspaces/pass/nihms-submission-etl/nihms-etl-integration (detached*)*$
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