Dockerfile to run planemo and rstudio with devtools and planemo

Dockerfile.devplan

# Planemo and RStudio with vignette-building capability (via R package 'devtools')
# Step 1 - Build from this Dockerfile (you must cd to the directory containing it first)
#               docker build -t eschen42/devplan .
# Step 2 - Create a home directory, e.g.:
#               mkdir ~/devplan
# Step 3 - Run the container with this new directory; note that the container will create
#          files in this directory with UID 1000 (which is user rstudio on the guest), e.g.:
#               docker run --name devplan --rm -ti -p 8787:8787 -p 8790:9090 -v ~/devplan:/home/rstudio eschen42/devplan
# Step 4 - On the host, browse to RStudio at http://localhost:8787
# Step 5 - Set up /home/rstudio/.ssh (on the guest; ~/devplan/.ssh on the host) if desired
#          and make sure that the permissions are right (see: https://superuser.com/a/215506)
# Step 6 - On the guest:
#          - Set up planemo in conda
#               wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
#               chmod +x Miniconda2-latest-Linux-x86_64.sh
#               ./Miniconda2-latest-Linux-x86_64.sh -b
#               rm Miniconda2-latest-Linux-x86_64.sh 
#               echo "export PATH='/home/rstudio/miniconda2/bin:$PATH'" >>~/.bash_profile
#               . ~/.bash_profile
#               conda config --add channels r
#               conda config --add channels bioconda
#               conda install -c conda-forge pyaml
#               conda install planemo
# Step 7 - On the guest:
#          - Set up access to git
#          - Clone the wrapper project you want to work with and cd to it.
#          - Run the following:
#               #planemo conda_init  # this is unnecessary unless conda is not installed
#               planemo conda_install .
#               planemo test --conda_dependency_resolution .
#          - Once tests are passing, run the following:
#               planemo serve --host 0.0.0.0 --conda_dependency_resolution .
# Step 7 - On the host, browse to the test instance at http://localhost:8790

FROM rocker/verse:3.4.1
MAINTAINER Arthur C. Eschenlauer, esch0041@umn.edu
RUN /bin/sh -c 'apt-get update'   && \
    /bin/sh -c 'apt-get install -y texlive-science texlive-latex-extra'
RUN apt-get -y install bzip2 curl wget vim-tiny 
RUN update-alternatives --install /usr/bin/vim vim /usr/bin/vim.tiny 10
RUN apt-get -y install net-tools bind9-host dnsutils
RUN apt-get -y install locales gawk debconf git
RUN locale-gen en_US.UTF-8 && update-locale LANG=en_US.UTF-8
RUN sed -i -e '/rstudio:$/ s/:$/:\/bin\/bash/' /etc/passwd

#optional - install man pages
RUN apt-get -y install man-db manpages manpages-dev

RUN apt-get -y install procps
RUN apt-get -y install openssh-client

RUN echo "su - rstudio" >> /init