If you are as confused as I am about how to distinguish algorithms, scripts, macros, plugins, ops, commands and modules, welcome to this page.
TODO needs a class hierarchy view
src | |
../../../addons/ofx2DMapping/src | |
../../../addons/ofxAccelerometer/src | |
../../../addons/ofxBlur/src | |
../../../addons/ofxBox2d/src | |
../../../addons/ofxBox2d/src/lib/Box2D/Include | |
../../../addons/ofxBox2d/src/lib/Box2D/Source/Collision | |
../../../addons/ofxBox2d/src/lib/Box2D/Source/Collision/Shapes | |
../../../addons/ofxBox2d/src/lib/Box2D/Source/Common |
// creating images | |
Object img1 = ij.io().open("https://samples.fiji.sc/blobs.png"); | |
Object img2 = ij.io().open("https://samples.fiji.sc/new-lenna.jpg"); | |
// showing images | |
ij.ui().show(img1); | |
ij.ui().show(img2); | |
// get images | |
List<Dataset> datasets = ij.dataset().getDatasets(); |
https://imagej.net/Scripting_Headless | |
Start a SciJava command from command line: | |
./ImageJ-linux64 --run org.scijava.plugins.commands.debug.DumpStack | |
.. headless: | |
./ImageJ-linux64 --headless --run org.scijava.plugins.commands.debug.DumpStack | |
Calling a script from command line: | |
./ImageJ-linux64 --ij2 --headless --console --run hello.py 'name1="Mr",name2="Mrs Kraken"' |
#@ File (label = "Input directory", style = "directory") input | |
#@ File (label = "Output directory", style = "directory") output | |
#@ String (label = "File suffix", value = ".jpg") suffix | |
processFolder(input); | |
function processFolder(input) { | |
list = getFileList(input); | |
list = Array.sort(list); | |
for (i = 0; i < list.length; i++) { |
'use strict'; | |
const fs = require('fs'); | |
var http = require('http'); | |
http.createServer(function (req, res) { | |
res.setHeader("Content-Type", "text/html"); | |
let rawdata = fs.readFileSync('imagej-imagej.json'); | |
let room = JSON.parse(rawdata); | |
room.sort(function(a,b) { | |
if ( a.sent < b.sent ) | |
return -1; |
import os | |
import re | |
import tifffile | |
# adjust to dataset: | |
input_dir = "PATH_TO_TIFFS" | |
pixel_size = 0.225 | |
maximum_shift_microns = 50 |