Gaurav Vaidya gaurav
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| { | |
| "@context": { | |
| "obo": "http://purl.obolibrary.org/obo/", | |
| "denotes": { | |
| "@id": "obo:IAO_0000219", | |
| "@type": "@id" | |
| } | |
| }, |
gaurav
/ fails.jsonld
Last active
October 15, 2018 19:39
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| [{ | |
| "@context": "https://www.phyloref.org/curation-tool/json/phyx.json", | |
| "@type": "owl:Ontology", | |
| "citation": "Example" | |
| }] |
gaurav
/ paper-from-clade-ontology.owl
Created
October 23, 2018 21:52
Test case for phyloref/jphyloref#24
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <rdf:RDF | |
| xmlns:ns1="http://www.w3.org/2002/07/owl#" | |
| xmlns:ns2="http://www.essepuntato.it/2012/04/tvc/" | |
| xmlns:ns3="http://rs.tdwg.org/dwc/terms/" | |
| xmlns:ns4="http://vocab.phyloref.org/phyloref/testcase.owl#" | |
| xmlns:ns5="http://purl.org/opentree/nexson#" | |
| xmlns:ns6="http://purl.obolibrary.org/obo/" | |
| xmlns:ns7="http://ontology.phyloref.org/phyloref.owl#" | |
| xmlns:ns8="http://purl.org/spar/pso/" |
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| " Activate pathogen. | |
| call pathogen#infect() | |
| call pathogen#helptags() | |
| " These are a few of my favourite settings. | |
| syntax on | |
| set background=dark | |
| set hlsearch | |
| set incsearch | |
| set smartindent |
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| Jon Jon Wendt gives Gene Valgene his hooded cloak. | |
| Gene Valgene: ... | |
| Gene Valgene: [Batman voice] I'm the Batman now. | |
| Jon Jon Wendt: Batman! | |
| Gene Valgene: Batman. | |
| Jon Jon Wendt: Batman! Batman! Batman! | |
| Gene Valgene: BAAAAAAAAAT | |
| Gene Valgene: MAAAAAAAAAAN | |
| Jon Jon Wendt: That's the spirit! | |
| Gene Valgene: [Batman voice] Hmm. |
gaurav
/ field_summaries.2019-nov-4
Created
November 4, 2019 23:33
List of fields used in PubMed Annual Baseline 2019
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| # '.' indicates XML nodes | |
| # '/' indicates XML attributes | |
| # '#' are XML values, but only for some fields | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText,34722040) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mn,2) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mrow.mi,7) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mrow.mo,6) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mrow.msub.mi,4) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.msup.mi,1) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.msup.mrow.mi,1) |
gaurav
/ CGEX_CtxAll010-shex-validation.json
Created
January 14, 2020 16:23
ShEx validation of example validation for CGEX_CtxAll010
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| { | |
| "type": "Failure", | |
| "node": "http://dataexchange.clinicalgenome.org/CGEX_CtxAll010", | |
| "shape": "http://dataexchange.clinicalgenome.org/interpretation/shacl/shapes/ContextualAllele", | |
| "errors": [ | |
| { | |
| "type": "TypeMismatch", | |
| "triple": { | |
| "type": "TestedTriple", | |
| "subject": "http://dataexchange.clinicalgenome.org/CGEX_CtxAll010", |
gaurav
/ PFB dd_100.avro metadata.json
Last active
May 20, 2020 14:36
JSON representations of PFB file at https://github.com/uc-cdis/sc19-pfb-artifacts/blob/2377856b2bb7d5f0147c2981d0ea762c481f6eb5/pfb-remake/dd_100.avro
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| { | |
| "nodes": [ | |
| { | |
| "name": "root", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [], | |
| "properties": [] | |
| }, | |
| { |
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| $ pipenv install linkml==0.0.7 | |
| Creating a Pipfile for this project... | |
| Installing linkml==0.0.7... | |
| Adding linkml to Pipfile's [packages]... | |
| ✔ Installation Succeeded | |
| Pipfile.lock not found, creating... | |
| Locking [dev-packages] dependencies... | |
| Locking [packages] dependencies... | |
| Building requirements... | |
| Resolving dependencies... |
gaurav
/ crdch_model_pr_112_vs_v1.0.1.diff
Last active
September 16, 2021 20:23
Diff between CRDCH model in PR 112 vs v1.0.1
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| --- ccdhmodel.yaml 2021-09-16 14:57:11.000000000 -0400 | |
| +++ crdch_model.yaml 2021-09-16 14:56:48.000000000 -0400 | |
| @@ -1,84 +1,84 @@ | |
| name: CRDC-H | |
| notes: | |
| - Derived from [CDM_Dictionary_v1 (Active)](https://docs.google.com/spreadsheets/d/1oWS7cao-fgz2MKWtyr8h2dEL9unX__0bJrWKv6mQmM4) | |
| -id: https://example.org/ccdh | |
| -version: v1.0-3-g99ffd30c-dirty | |
| +id: https://example.org/crdch | |
| +version: v0.2-346-g2a758251 |