I hereby claim:
- I am gaurav on github.
- I am mrvaidya (https://keybase.io/mrvaidya) on keybase.
- I have a public key ASAvem26jsIZR6NjpVs9WeJv0Pz7wwYK1cOBUVhqIVSwtAo
To claim this, I am signing this object:
Gaurav Vaidya gaurav
gaurav
/ PMID_7837719-2022nov8.json
Last active
November 8, 2022 15:00
token_classification+nemo outputs as of 2022nov8
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| { | |
| "text": "[Time-course of adenosine deaminase activity in the cerebrospinal fluid in patients with tuberculous meningitis].\nThe level of adenosine deaminase (ADA) activity in the cerebrospinal fluid is used as a supportive diagnostic measure for tuberculous meningitis. However the time-course of adenosine deaminase activity of the cerebrospinal fluid in patients with tuberculous meningitis remains unknown. The present study describes 4 patients with tuberculous meningitis in whom ADA activity in the cerebrospinal fluid was serially determined in order to clarify the effects of anti-tuberculous chemotherapy on ADA activity in the cerebrospinal fluid. In two of these patients the ADA did not show a high activity in the early stage of the disease. But in all cases the ADA showed a high activity after all, and gradually declined and reached the normal level at approximately 1 month after the initiation of chemotherapy. It seems that the decrease in the ADA activity was seen when T cells in the cerebrospinal f |
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| prefix owl: <http://www.w3.org/2002/07/owl#> | |
| prefix oboInOwl: <http://www.geneontology.org/formats/oboInOwl#> | |
| SELECT ?cls ?pred ?val | |
| from <http://reasoner.renci.org/ontology> | |
| WHERE | |
| { ?cls ?pred ?val ; | |
| a owl:Class . | |
| FILTER ( | |
| ?pred = oboInOwl:hasRelatedSynonym || |
gaurav
/ commands.sh
Last active
January 14, 2022 06:41
Some sample data demonstrating https://github.com/svjan5/medtype/issues/14
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| # Commands used to generate the other two files | |
| head -n 70 medmentions.json | tail -n 1 > medmentions-line-70.json | |
| head -n 2 pubmed_ds/split_0.txt | tail -n 1 > pubmed-line-2.json |
gaurav
/ keybase.md
Created
December 13, 2021 00:12
gaurav
/ crdch_model_pr_112_vs_v1.0.1.diff
Last active
September 16, 2021 20:23
Diff between CRDCH model in PR 112 vs v1.0.1
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| --- ccdhmodel.yaml 2021-09-16 14:57:11.000000000 -0400 | |
| +++ crdch_model.yaml 2021-09-16 14:56:48.000000000 -0400 | |
| @@ -1,84 +1,84 @@ | |
| name: CRDC-H | |
| notes: | |
| - Derived from [CDM_Dictionary_v1 (Active)](https://docs.google.com/spreadsheets/d/1oWS7cao-fgz2MKWtyr8h2dEL9unX__0bJrWKv6mQmM4) | |
| -id: https://example.org/ccdh | |
| -version: v1.0-3-g99ffd30c-dirty | |
| +id: https://example.org/crdch | |
| +version: v0.2-346-g2a758251 |
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| $ pipenv install linkml==0.0.7 | |
| Creating a Pipfile for this project... | |
| Installing linkml==0.0.7... | |
| Adding linkml to Pipfile's [packages]... | |
| ✔ Installation Succeeded | |
| Pipfile.lock not found, creating... | |
| Locking [dev-packages] dependencies... | |
| Locking [packages] dependencies... | |
| Building requirements... | |
| Resolving dependencies... |
gaurav
/ PFB dd_100.avro metadata.json
Last active
May 20, 2020 14:36
JSON representations of PFB file at https://github.com/uc-cdis/sc19-pfb-artifacts/blob/2377856b2bb7d5f0147c2981d0ea762c481f6eb5/pfb-remake/dd_100.avro
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| { | |
| "nodes": [ | |
| { | |
| "name": "root", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [], | |
| "properties": [] | |
| }, | |
| { |
gaurav
/ CGEX_CtxAll010-shex-validation.json
Created
January 14, 2020 16:23
ShEx validation of example validation for CGEX_CtxAll010
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| { | |
| "type": "Failure", | |
| "node": "http://dataexchange.clinicalgenome.org/CGEX_CtxAll010", | |
| "shape": "http://dataexchange.clinicalgenome.org/interpretation/shacl/shapes/ContextualAllele", | |
| "errors": [ | |
| { | |
| "type": "TypeMismatch", | |
| "triple": { | |
| "type": "TestedTriple", | |
| "subject": "http://dataexchange.clinicalgenome.org/CGEX_CtxAll010", |
gaurav
/ field_summaries.2019-nov-4
Created
November 4, 2019 23:33
List of fields used in PubMed Annual Baseline 2019
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| # '.' indicates XML nodes | |
| # '/' indicates XML attributes | |
| # '#' are XML values, but only for some fields | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText,34722040) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mn,2) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mrow.mi,7) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mrow.mo,6) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.mrow.msub.mi,4) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.msup.mi,1) | |
| (PubmedArticleSet.PubmedArticle.MedlineCitation.Article.Abstract.AbstractText.DispFormula.math.mfrac.msup.mrow.mi,1) |
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| Jon Jon Wendt gives Gene Valgene his hooded cloak. | |
| Gene Valgene: ... | |
| Gene Valgene: [Batman voice] I'm the Batman now. | |
| Jon Jon Wendt: Batman! | |
| Gene Valgene: Batman. | |
| Jon Jon Wendt: Batman! Batman! Batman! | |
| Gene Valgene: BAAAAAAAAAT | |
| Gene Valgene: MAAAAAAAAAAN | |
| Jon Jon Wendt: That's the spirit! | |
| Gene Valgene: [Batman voice] Hmm. |
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