Karthik gkarthik

## basespace_quickstart.md

      
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                darencard
                / basespace_quickstart.md
            
            
              Created
              October 3, 2018 16:40
            
              
                Installing, authenticating, and downloading using BaseSpace CLI
              
          
    Installing, authenticating, and downloading using BaseSpace CLI

Installation on Mac computer


Install BaseSpace CLI to $HOME/bin directory and make executable.

wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-osx/bs?bt_package=latest" \
-O $HOME/bin/bs
chmod u+x $HOME/bin/bs

  
## Matrix.md

      
              7 files
            
          
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              860 stars
            
          
                nadavrot
                / Matrix.md
            
            
              Last active
              May 5, 2024 08:37
            
              
                Efficient matrix multiplication
              
          
    High-Performance Matrix Multiplication

This is a short post that explains how to write a high-performance matrix
multiplication program on modern processors. In this tutorial I will use a
single core of the Skylake-client CPU with AVX2, but the principles in this post
also apply to other processors with different instruction sets (such as AVX512).
Intro

Matrix multiplication is a mathematical operation that defines the product of

  
## setupdb.md

      
              1 file
            
          
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              49 stars
            
          
                danisfermi
                / setupdb.md
            
            
              Created
              December 15, 2017 23:00
            
              
                Setup gdb on Mac OS Sierra/High Sierra
              
          
    Here are the steps to installing and setting up GDB on Mac OS Sierra/High Sierra.
Run brew install gdb.
On starting gdb, you will get the following error:
Unable to find Mach task port for process-id 2133: (os/kern) failure (0x5).
 (please check gdb is codesigned - see taskgated(8))
To fix this error, follow the following steps:

  
## README.md

      
              1 file
            
          
              106 forks
            
          
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              724 stars
            
          
                joyrexus
                / README.md
            
            
              Last active
              February 24, 2024 15:16
            
              
                collapsible markdown
              
          
    collapsible markdown?

CLICK ME

yes, even hidden code blocks!

print("hello world!")

  
## framework-sizes.md

      
              1 file
            
          
              25 forks
            
          
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              518 stars
            
          
                Restuta
                / framework-sizes.md
            
            
              Last active
              March 7, 2024 00:01
            
              
                Sizes of JS frameworks, just minified + minified and gzipped, (React, Angular 2, Vue, Ember)
              
          
    Below is the list of modern JS frameworks and almost frameworks – React, Vue, Angular, Ember and others.
All files were downloaded from https://cdnjs.com and named accordingly.
Output from ls command is stripped out (irrelevant stuff)
As-is (minified)

$ ls -lhS
566K Jan 4 22:03 angular2.min.js


## Parse_VCF_BCFs_with_htslib_C++.md

      
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                gatoravi
                / Parse_VCF_BCFs_with_htslib_C++.md
            
            
              Last active
              November 16, 2020 10:28
            
              
                Parse VCF/BCFs with htslib (C++)
              
          
    #Gist of the gist
This is a simple example showing how htslib can be used to parse VCF/BCF files in C++.
Compiling options are shown in compile_and_run.sh, this assumes that you have compiled htslib into a static library - libhts.a,
post a comment if you'd like help doing that.
The program takes a VCF file and spits out chromosome, position and number_of_alleles for each record in the VCF.
This test in the Samtools repo - [https://github.com/samtools/htslib/blob/1.2.1/test/test-vcf-api.c] also has some useful examples, note you might have to switch to the master branch version of that file to keep up with the currently rapidly evolving htslib API.
#Acknowledgements

  
## elasticsearch-restclient
# Using Emacs Restclient Mode to explore the Elasticsearch REST API
# http://www.elasticsearch.org/guide/en/elasticsearch/reference/

:es = http://127.0.0.1:9200

# Cluster Health

GET :es/_cat/health?v

# List of nodes

## angular-compile-dynamic-html.md

      
              1 file
            
          
              1 fork
            
          
              15 comments
            
          
              14 stars
            
          
                umidjons
                / angular-compile-dynamic-html.md
            
            
              Created
              August 12, 2014 05:14
            
              
                Compile dynamic template from outside of angular.
              
          
    Compile dynamic template from outside of angular

I want to load dynamic HTML content via AJAX, then compile it, because it contains
angular directives.
<!DOCTYPE html>
<html ng-app="app">
<head>

  
## compress-pdf-with-gs.md

      
              1 file
            
          
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                guifromrio
                / compress-pdf-with-gs.md
            
            
              Created
              August 30, 2013 14:39
            
              
                Compress PDF files with ghostscript
              
          
    This can reduce files to ~15% of their size (2.3M to 345K, in one case) with no obvious degradation of quality.
ghostscript -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/printer -dNOPAUSE -dQUIET -dBATCH -sOutputFile=output.pdf input.pdf

Other options for PDFSETTINGS:

/screen selects low-resolution output similar to the Acrobat Distiller "Screen Optimized" setting.
/ebook selects medium-resolution output similar to the Acrobat Distiller "eBook" setting.
/printer selects output similar to the Acrobat Distiller "Print Optimized" setting.
/prepress selects output similar to Acrobat Distiller "Prepress Optimized" setting.


## object-watch.js
/*
 * object.watch polyfill
 *
 * 2012-04-03
 *
 * By Eli Grey, http://eligrey.com
 * Public Domain.
 * NO WARRANTY EXPRESSED OR IMPLIED. USE AT YOUR OWN RISK.
 */
	# Using Emacs Restclient Mode to explore the Elasticsearch REST API
	# http://www.elasticsearch.org/guide/en/elasticsearch/reference/

	:es = http://127.0.0.1:9200

	# Cluster Health

	GET :es/_cat/health?v

	# List of nodes
	/*
	* object.watch polyfill
	*
	* 2012-04-03
	*
	* By Eli Grey, http://eligrey.com
	* Public Domain.
	* NO WARRANTY EXPRESSED OR IMPLIED. USE AT YOUR OWN RISK.
	*/