Anton Goloborodko golobor
golobor
/ gist:fea8b74fce5e1b8119e6c8dc96671f07
Created
December 1, 2018 05:52
— forked from suimye/gist:d8edec74cce9ecad86cd
For retrieving fastq file from NCBI GEO using GSM number.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/sh | |
| if ! type "efetch" > /dev/null; then | |
| print "Please install E-utilitie." | |
| fi | |
| GSM_LIST=$1 | |
| GSMs=`cat $GSM_LIST|cut -f1` | |
| #echo $SRRs | |
| ! type "foo" > /dev/null 2>&1; | |
| for GSM in $GSMs; do |