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@ayaksvals
ayaksvals / csv_sort_parquet(DaskVersion).ipynb
Created August 14, 2024 15:24
Read csv with pypairix. Sort. Save to Parquet. Read for test
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@suimye
suimye / gist:d8edec74cce9ecad86cd
Last active April 2, 2020 12:15
For retrieving fastq file from NCBI GEO using GSM number.
#!/bin/sh
if ! type "efetch" > /dev/null; then
print "Please install E-utilitie."
fi
GSM_LIST=$1
GSMs=`cat $GSM_LIST|cut -f1`
#echo $SRRs
! type "foo" > /dev/null 2>&1;
for GSM in $GSMs; do
@waylan
waylan / subprocess_pipe.md
Created April 10, 2012 19:12
Writing to a python subprocess pipe

Here's a few things I tried to write output to a python subprocess pipe.

from subprocess import Popen, PIPE

p = Popen('less', stdin=PIPE)
for x in xrange(100):
    p.communicate('Line number %d.\n' % x)