Gregor Sturm grst
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| [user] | |
| email = mail@gregor-sturm.de | |
| name = Gregor Sturm | |
| [push] | |
| default = simple | |
| [alias] | |
| co = checkout | |
| ci = commit | |
| br = branch | |
| st = status |
grst
/ python_chunks.Rmd
Created
April 28, 2017 17:58
inconsistent .nb.html from .Rmd with python chunks.
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| --- | |
| title: "Example 5" | |
| output: html_notebook | |
| --- | |
| # Header | |
| A paragraph. | |
| test |
grst
/ data_vector.tsv
Created
May 17, 2017 17:24
ggplot + geom_histogram() vs. hist() on p-value distributions.
We can make this file beautiful and searchable if this error is corrected: No tabs found in this TSV file in line 0.
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| p_values | |
| 3.45215714452248e-14 | |
| 1.0550849539084597e-16 | |
| 5.5882162546559395e-11 | |
| 1.6787651540030319e-12 | |
| 1.4432076400915096e-8 | |
| 3.7886353158582805e-10 | |
| 8.535813058629706e-16 | |
| 7.612259051521411e-10 | |
| 2.817440508985307e-9 |
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| @Article{Bartel2004, | |
| Author="Bartel, D. P. ", | |
| Title="{{M}icro{R}{N}{A}s: genomics, biogenesis, mechanism, and function}", | |
| Journal="Cell", | |
| Year="2004", | |
| Volume="116", | |
| Number="2", | |
| Pages="281--297", | |
| Month="Jan", | |
| doi = {10.1016/s0092-8674(04)00045-5}, |
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| == 2018-01-26 11:11:43,530 easyblock.py:264 INFO This is EasyBuild 3.5.1 (framework: 3.5.1, easyblocks: 3.5.1) on host eldorado. | |
| == 2018-01-26 11:11:43,530 easyblock.py:270 INFO This is easyblock EB_binutils from module easybuild.easyblocks.binutils (/storage/apps/easybuild/software/EasyBuild/3.5.1/lib/python2.7/site-packages/easybuild_easyblocks-3.5.1-py2.7.egg/easybuild/easyblocks/b/binutils.pyo) | |
| == 2018-01-26 11:11:43,531 easyblock.py:815 INFO Build dir set to /storage/apps/easybuild/build/binutils/2.29/GCCcore-system | |
| == 2018-01-26 11:11:43,531 easyblock.py:856 INFO Software install dir set to /storage/apps/easybuild/software/binutils/2.29-GCCcore-system | |
| == 2018-01-26 11:11:43,532 easyblock.py:861 INFO Module install dir set to /storage/apps/easybuild/modules/all | |
| == 2018-01-26 11:11:43,532 easyblock.py:249 INFO Init completed for application name binutils version 2.29 | |
| == 2018-01-26 11:11:43,532 easyblock.py:2659 INFO Obtained application instance of for binutils (easyblock: None) | |
| == 2018-01-26 11:11:43,533 |
grst
/ perl_log.txt
Created
January 29, 2018 08:27
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| == 2018-01-29 09:00:32,285 main.py:79 INFO This is EasyBuild 3.5.1 (framework: 3.5.1, easyblocks: 3.5.1) on host eldorado. | |
| == 2018-01-29 09:00:32,285 main.py:82 INFO Command line: --buildpath='/storage/apps/easybuild/build' --installpath='/storage/apps/easybuild' --packagepath='/storage/apps/easybuild/packages' --prefix='/storage/apps/easybuild' --repositorypath='/storage/apps/easybuild/ebfiles_repo' --robot='/storage/apps/easybuild/software/EasyBuild/3.5.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1-py2.7.egg/easybuild/easyconfigs' --software='Perl,5.26.0' --sourcepath='/storage/apps/easybuild/sources' --toolchain-name='GCCcore' | |
| == 2018-01-29 09:00:32,285 main.py:84 INFO Using /storage/home/sturm/tmp/eb-1FfxLn as temporary directory | |
| == 2018-01-29 09:00:32,285 robot.py:56 INFO Using robot path(s): ['/storage/apps/easybuild/software/EasyBuild/3.5.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.1-py2.7.egg/easybuild/easyconfigs'] | |
| == 2018-01-29 09:00:32,285 options.py:1199 INFO Using default |
grst
/ pandas-vs-d.ipynb
Created
February 14, 2018 21:08
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| --- | |
| title: "test" | |
| output: html_document | |
| --- | |
| ```{python} | |
| import logging | |
| l = logging.getLogger('test') | |
| l.addHandler(logging.StreamHandler()) |
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