Jupyter Conda setup

jupyter-global-setup.sh

# Windows instructions are analogous

## Global Jupyter install

conda create -n jupyter python jupyter
echo "alias jupyter-global=/opt/anaconda/envs/jupyter/bin/jupyter" >> ~/.bashrc


## Standard project setup

cd ~/projects  # where i keep all my work
mkdir new-project
cd new-project
git init
echo "conda-env/" >> .gitignore

conda create -p ./conda-env python=3.6 ipykernel r rpy2
conda activate ./conda-env

python -m ipykernel --user --name=project__my-project__py36 --display-name="[project] My Project (Python 3.6)"


## Use in the Jupyter console -- I usually just use the local IPython instead

jupyter-global console --kernel=project__my-project__py36


## Use in the Jupyter notebook

jupyter-global notebook
# You should now be able to access the "[project] My Project (Python 3.6)" kernel