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View script.sh
FILE=img1.tif
if [ -f $FILE ]; then
echo "File "$FILE" exists."
else
echo "File "$FILE" does not exist."
exit -1
fi
View script.m
addpath( 'OMERO.matlab-5.2.2-ice35-b17' )
server = 'localhost';
port = 4064;
username = 'murphylab';
password = 'murphylab';
client = loadOmero( server, port );
session = client.createSession( username, password );
View graph.dot
digraph demo2D00_calls {
rankdir="LR"
node [shape=box, color=blue]
demo2D00 -> ml_initparam;
demo2D00 -> slml2img;
AdjustResolutions -> tp_stretch3d;
AverageEnergy -> est_curv;
CompressLib -> packableObject;
Greedy3D_integration_compressed -> Greedy3D_compressed_default_options;
Greedy3D_integration_compressed -> Greedy3D_single_step_compressed;
View script.sh
#!/bin/bash
##make virtual environment
virtualenv --system-site-packages .
##activate virtual environment
source ./bin/activate
#get biopython
pip install -U biopython
View script.sh
#!/bin/bash
##this is an example described in section 2.4.1
##http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc10
wget -nc http://biopython.org/DIST/docs/tutorial/examples/ls_orchid.fasta
echo "
from Bio import SeqIO
for seq_record in SeqIO.parse("ls_orchid.fasta", "fasta"):
View script.sh
#!/bin/bash
## Ivan E. Cao-Berg (icaoberg@scs.cmu.edu)
## Copyright (C) 2016
##
## This program is free software; you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published
## by the Free Software Foundation; either version 2 of the License,
## or (at your option) any later version.
##
View script.sh
#!/bin/bash
## the next line selects the partition/queue
#SBATCH -p short1
## the next line selects the number of nodes
#SBATCH -N 1
## the next line selects the number of CPUs
#SBATCH -n 1
View script.sh
#!/bin/bash
## the next line selects the partition/queue
#SBATCH -p pool1
## the next line selects the number of nodes
#SBATCH -N 1
## the next line selects the number of CPUs
#SBATCH -n 1
View script.sh
#!/bin/bash
## the next line selects the partition/queue
#SBATCH -p pool1
## the next line selects the number of nodes
#SBATCH -N 1
## the next line selects the number of CPUs
#SBATCH -n 1
View script.sh
#!/bin/bash
## the next line selects the partition/queue
#SBATCH -p pool1
## the next line selects the number of nodes
#SBATCH -N 1
## the next line selects the number of CPUs
#SBATCH -n 1
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