icaoberg icaoberg

## example02.sh
# icaoberg - this example is fork that uses a bedtools in a Singularity container
CONTAINER=../../singularity-bedtools.simg

echo "chr1	10	50	10" > a.bed
echo "chr1	20	40	20" > b.bed
echo "chr1	30	33	30" > c.bed

# Find the sub-intervals shared and unique to each file.
if [ -f $CONTAINER ]; then
	singularity run --app bedtools $CONTAINER multiinter -i a.bed b.bed c.bed | column -t

## .gitignore
*.txt
*.bedg

## pypistats.py
#!/usr/bin/env python

import bz2
import datetime
import os
import sys
import time
import urllib2
import warnings
	# icaoberg - this example is fork that uses a bedtools in a Singularity container
	CONTAINER=../../singularity-bedtools.simg

	echo "chr1 10 50 10" > a.bed
	echo "chr1 20 40 20" > b.bed
	echo "chr1 30 33 30" > c.bed

	# Find the sub-intervals shared and unique to each file.
	if [ -f $CONTAINER ]; then
	singularity run --app bedtools $CONTAINER multiinter -i a.bed b.bed c.bed \| column -t
	#!/usr/bin/env python

	import bz2
	import datetime
	import os
	import sys
	import time
	import urllib2
	import warnings