Created
February 16, 2016 06:04
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Using GraphViz-like tools for MATLAB on demo2D00
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| digraph demo2D00_calls { | |
| rankdir="LR" | |
| node [shape=box, color=blue] | |
| demo2D00 -> ml_initparam; | |
| demo2D00 -> slml2img; | |
| AdjustResolutions -> tp_stretch3d; | |
| AverageEnergy -> est_curv; | |
| CompressLib -> packableObject; | |
| Greedy3D_integration_compressed -> Greedy3D_compressed_default_options; | |
| Greedy3D_integration_compressed -> Greedy3D_single_step_compressed; | |
| Greedy3D_integration_compressed -> contrast_stretch; | |
| Greedy3D_integration_compressed -> process_options_structure; | |
| Greedy3D_integration_compressed -> reshape_contrast; | |
| Greedy3D_lambda_pre_compressed -> Greedy3D_compressed_default_options; | |
| Greedy3D_lambda_pre_compressed -> Greedy3D_integration_compressed; | |
| Greedy3D_lambda_pre_compressed -> WindowedImage; | |
| Greedy3D_lambda_pre_compressed -> process_options_structure; | |
| Greedy3D_single_step_compressed -> Greedy3D_compressed_default_options; | |
| Greedy3D_single_step_compressed -> Greedy3D_single_step_window; | |
| Greedy3D_single_step_compressed -> WindowedImage; | |
| Greedy3D_single_step_compressed -> process_options_structure; | |
| Greedy3D_single_step_window -> Greedy3D_compressed_default_options; | |
| Greedy3D_single_step_window -> Greedy3D_kernel_resampled; | |
| Greedy3D_single_step_window -> convnfft; | |
| Greedy3D_single_step_window -> convnfft_fast; | |
| Greedy3D_single_step_window -> mean2; | |
| Greedy3D_single_step_window -> process_options_structure; | |
| Greedy3D_single_step_window -> smooth_gradient; | |
| MT_synth -> AdjustResolutions; | |
| MT_synth -> cart2img; | |
| MT_synth -> checkRebounce; | |
| MT_synth -> ml_bcimg; | |
| MT_synth -> ml_initparam; | |
| MT_synth -> randraw; | |
| WindowedImage -> CompressLib; | |
| addMeshObjects -> addVol_SurfArea; | |
| addMeshObjects -> getMeshPoints; | |
| addMeshObjects -> makeIso2mesh; | |
| addMeshObjects -> meshSurfaceArea; | |
| addMeshObjects -> ml_initparam; | |
| addMeshObjects -> tp_stretch3d; | |
| bfGetReader -> bfCheckJavaPath; | |
| bfGetReader -> bfGetFileExtensions; | |
| bfopen -> bfCheckJavaPath; | |
| bfopen -> bfGetPlane; | |
| bfopen -> bfGetReader; | |
| cgals2m -> deletemeshfile; | |
| cgals2m -> fallbackexeext; | |
| cgals2m -> getexeext; | |
| cgals2m -> getoptkey; | |
| cgals2m -> getvarfrom; | |
| cgals2m -> mcpath; | |
| cgals2m -> meshcheckrepair; | |
| cgals2m -> mwpath; | |
| cgals2m -> readmedit; | |
| cgals2m -> saveoff; | |
| cgals2m -> varargin2struct; | |
| cgalv2m -> deletemeshfile; | |
| cgalv2m -> fallbackexeext; | |
| cgalv2m -> getexeext; | |
| cgalv2m -> getvarfrom; | |
| cgalv2m -> mcpath; | |
| cgalv2m -> mwpath; | |
| cgalv2m -> readmedit; | |
| cgalv2m -> saveinr; | |
| convnfft -> inplaceprod; | |
| deletemeshfile -> mwpath; | |
| est_curv -> fitcircle; | |
| faceNormal -> normalizeVector3d; | |
| faceNormal -> vectorCross3d; | |
| fallbackexeext -> mcpath; | |
| findObjFit -> convnfft_fast; | |
| generate_frame_from_trained_shape_space_model -> render_point_3d_windowed; | |
| generate_walk_path -> chunk_finish; | |
| generate_walk_path -> chunk_start; | |
| generate_walk_path -> inhull; | |
| getBox -> ml_initparam; | |
| get_cellorganizer_default_parameters -> ml_initparam; | |
| getexeext -> isoctavemesh; | |
| getoptkey -> varargin2struct; | |
| im2blender -> ml_downsize; | |
| im2blender -> write_wobj; | |
| instance2SBML_mod -> addCSGObjects; | |
| instance2SBML_mod -> addMeshObjects; | |
| instance2SBML_mod -> addVol_SurfArea; | |
| instance2SBML_mod -> setupSBML; | |
| isMatFile -> getFileExtension; | |
| isMatFile -> isaFile; | |
| makeFrame -> AverageEnergy; | |
| makeFrame -> generate_frame_from_trained_shape_space_model; | |
| makeFrame -> img2tif; | |
| makeFrame -> process_options_structure; | |
| makeFrame -> reshape_contrast; | |
| makeIso2mesh -> ml_readimage; | |
| makeIso2mesh -> plotmesh; | |
| makeIso2mesh -> vol2mesh; | |
| maxsurf -> elemvolume; | |
| mcpath -> getvarfrom; | |
| meshSurfaceArea -> faceNormal; | |
| meshSurfaceArea -> normalizeVector3d; | |
| meshcheckrepair -> deletemeshfile; | |
| meshcheckrepair -> fallbackexeext; | |
| meshcheckrepair -> getexeext; | |
| meshcheckrepair -> mcpath; | |
| meshcheckrepair -> mwpath; | |
| meshcheckrepair -> readoff; | |
| meshcheckrepair -> removedupelem; | |
| meshcheckrepair -> removedupnodes; | |
| meshcheckrepair -> removeisolatednode; | |
| meshcheckrepair -> saveoff; | |
| meshcheckrepair -> surfedge; | |
| meshcheckrepair -> varargin2struct; | |
| meshresample -> deletemeshfile; | |
| meshresample -> fallbackexeext; | |
| meshresample -> getexeext; | |
| meshresample -> mcpath; | |
| meshresample -> meshcheckrepair; | |
| meshresample -> mwpath; | |
| meshresample -> readoff; | |
| meshresample -> saveoff; | |
| ml_bwmajorangle -> ml_bwmoment; | |
| ml_bwmajorangle2D -> ml_bwmoment2D; | |
| ml_cdf -> ml_evalfun; | |
| ml_celldistcode -> ml_edgecenter; | |
| ml_celldistcode -> ml_objs2img; | |
| ml_celldistcode2 -> ml_objcenter; | |
| ml_celldistcode2D -> ml_edgecenter2D; | |
| ml_celldistcode2D -> ml_normangle; | |
| ml_celldistcode2D -> ml_objs2img; | |
| ml_comfun -> ml_evalfun; | |
| ml_comfun -> ml_getvarnum; | |
| ml_crd2img -> ml_initparam; | |
| ml_crd2img -> ml_obj2img2D; | |
| ml_crd2img -> ml_showpts_2d; | |
| ml_edgecenter -> ml_bwmajorangle; | |
| ml_edgecenter -> ml_obj2img; | |
| ml_edgecenter2D -> ml_bwmajorangle2D; | |
| ml_edgecenter2D -> ml_obj2img2D; | |
| ml_edgecenter2D -> ml_showpts_2d; | |
| ml_evalfun -> ml_getvarnum; | |
| ml_evalfun -> ml_initparam; | |
| ml_evalfun2D -> ml_comfun; | |
| ml_evalfun2D -> ml_getvarnum; | |
| ml_evalfun2D -> ml_initparam; | |
| ml_evalfun2D -> ml_invpcatrans; | |
| ml_evalfun2D -> ml_mappos; | |
| ml_evalfun2D -> ml_mult2; | |
| ml_evalfun2D -> ml_sqr; | |
| ml_fopentemp -> ml_createfile_excl; | |
| ml_gaussimg -> ml_imcoords; | |
| ml_gaussimg2D -> ml_imcoords2D; | |
| ml_gaussobj -> ml_gaussimg; | |
| ml_gaussobj -> ml_wquantile; | |
| ml_gaussobj2D -> ml_gaussimg2D; | |
| ml_gaussobj2D -> ml_wquantile; | |
| ml_gencellcomp2D -> ml_addrow; | |
| ml_gencellcomp2D -> ml_boundbox2D; | |
| ml_gencellcomp2D -> ml_findobjs2D; | |
| ml_gencellcomp2D -> ml_gencellshape; | |
| ml_gencellcomp2D -> ml_genshape2D; | |
| ml_gencellcomp2D -> ml_initparam; | |
| ml_gencellcomp2D -> ml_mxp2img; | |
| ml_gencellcomp2D -> ml_obj2img2D; | |
| ml_gencellcomp2D -> ml_parsecell2D; | |
| ml_gencellcomp2D -> ml_showpts_2d; | |
| ml_gencellshape -> ml_addrow; | |
| ml_gencellshape -> ml_moldshape; | |
| ml_gencellshape -> ml_rnd; | |
| ml_gencellshape -> ml_shiftdist; | |
| ml_gencellshape3d -> ml_initparam; | |
| ml_gencellshape3d -> ml_interpcurve2img; | |
| ml_gencellshape3d -> ml_rnd; | |
| ml_gencellshape3d -> tp_pvalue; | |
| ml_genprotimg -> ml_celldistcode; | |
| ml_genprotimg -> ml_evalfun; | |
| ml_genprotimg -> ml_evallogistic; | |
| ml_genprotimg -> ml_gaussobj; | |
| ml_genprotimg -> ml_getinvfun; | |
| ml_genprotimg -> ml_imaddobj2; | |
| ml_genprotimg -> ml_initparam; | |
| ml_genprotimg -> ml_mnornd; | |
| ml_genprotimg -> ml_rnd; | |
| ml_genprotimg -> tz_rotateobj; | |
| ml_genprotimg2D -> ml_celldistcode2D; | |
| ml_genprotimg2D -> ml_evalfun; | |
| ml_genprotimg2D -> ml_evalfun2D; | |
| ml_genprotimg2D -> ml_evallogistic; | |
| ml_genprotimg2D -> ml_gaussobj2D; | |
| ml_genprotimg2D -> ml_getinvfun; | |
| ml_genprotimg2D -> ml_imaddobj2D; | |
| ml_genprotimg2D -> ml_initparam; | |
| ml_genprotimg2D -> ml_mnornd; | |
| ml_genprotimg2D -> ml_rnd; | |
| ml_genprotimg2D -> tz_rotateobj; | |
| ml_genshape2D -> ml_feat2sp; | |
| ml_genshape2D -> ml_initparam; | |
| ml_genshape2D -> ml_rnd; | |
| ml_getinvfun -> ml_getinvlinfun; | |
| ml_getlinept2 -> ml_getlinept; | |
| ml_getvarnum -> ml_iscomposite; | |
| ml_imaddobj2 -> ml_addrow; | |
| ml_imaddobj2 -> ml_boundbox; | |
| ml_imaddobj2 -> ml_calcobjcof; | |
| ml_imaddobj2 -> ml_initparam; | |
| ml_imaddobj2 -> ml_objinimg; | |
| ml_imaddobj2D -> ml_addrow2D; | |
| ml_imaddobj2D -> ml_boundbox2D; | |
| ml_imaddobj2D -> ml_calcobjcof2D; | |
| ml_imaddobj2D -> ml_initparam; | |
| ml_imaddobj2D -> ml_objinimg2D; | |
| ml_invpcatrans -> ml_addrow; | |
| ml_invpcatrans -> ml_initparam; | |
| ml_ls -> sort_nat; | |
| ml_mainobjcontour -> ml_findmainobj_bw; | |
| ml_mainobjcontour -> ml_obj2img2D; | |
| ml_mappos -> ml_initparam; | |
| ml_mxp2img -> ml_mxp2mxs; | |
| ml_mxp2img -> ml_mxs2img; | |
| ml_mxs2img -> ml_crd2img; | |
| ml_mxs2img -> ml_mxs2crd; | |
| ml_obj2img -> ml_objrecrange; | |
| ml_obj2img -> ml_objs2img; | |
| ml_obj2img2D -> ml_objrecrange; | |
| ml_obj2img2D -> ml_objs2img; | |
| ml_objcenter -> ml_bwmajorangle; | |
| ml_objcenter -> ml_obj2img; | |
| ml_objs2img -> ml_objinimg2D; | |
| ml_parsecell2D -> ml_addrow; | |
| ml_parsecell2D -> ml_bwmajorangle2D; | |
| ml_parsecell2D -> ml_getlinept2; | |
| ml_parsecell2D -> ml_imgptspixel; | |
| ml_parsecell2D -> ml_mainobjcontour; | |
| ml_parsecell2D -> ml_obj2img2D; | |
| ml_parsecell2D -> ml_setimglnpixel2; | |
| ml_parsecell2D -> ml_tracecontour; | |
| ml_readimage -> bfopen; | |
| ml_readimage -> ml_fopentemp; | |
| ml_readimage -> ml_tclread; | |
| ml_readimage -> tif2img; | |
| ml_rnd -> ml_cdf; | |
| ml_rnd -> ml_evalfun; | |
| ml_rnd -> ml_getinvfun; | |
| ml_rnd -> ml_initparam; | |
| ml_rnd -> ml_mnornd; | |
| ml_setimglnpixel2 -> ml_getlinept2; | |
| ml_setimglnpixel2 -> ml_setimgptspixel; | |
| ml_showpts_2d -> ml_getlinept; | |
| ml_showpts_2d -> tz_showpts_2d; | |
| ml_tracecontour -> ml_addrow; | |
| ml_tracecontour -> ml_shift; | |
| model2centrosome -> AdjustResolutions; | |
| model2diffeomorphicInstance -> chunk_finish; | |
| model2diffeomorphicInstance -> chunk_start; | |
| model2diffeomorphicInstance -> generate_walk_path; | |
| model2diffeomorphicInstance -> makeFrame; | |
| model2diffeomorphicInstance -> ml_initparam; | |
| model2diffeomorphicInstance -> ml_ls; | |
| model2diffeomorphicInstance -> ml_readimage; | |
| model2diffeomorphicInstance -> random_string; | |
| model2framework -> cropImgND; | |
| model2framework -> ml_gencellcomp2D; | |
| model2framework -> ml_gencellshape3d; | |
| model2framework -> ml_initparam; | |
| model2framework -> model2diffeomorphicInstance; | |
| model2framework -> rm_gencellcomp2D_circle; | |
| model2framework -> rm_gensphere; | |
| model2framework -> tp_gennucshape; | |
| model2framework -> tp_genspsurf; | |
| model2img -> AdjustResolutions; | |
| model2img -> ml_bcimg; | |
| model2img -> ml_genprotimg2D; | |
| model2img -> ml_initparam; | |
| model2img -> model2framework; | |
| model2img -> model2instance; | |
| model2img -> objectMovementModel; | |
| model2img -> tp_stretch3d; | |
| model2instance -> AdjustResolutions; | |
| model2instance -> micro2psf; | |
| model2instance -> ml_genprotimg; | |
| model2instance -> ml_initparam; | |
| model2instance -> model2centrosome; | |
| model2instance -> model2microtubules; | |
| model2instance -> psf_blur_hela_mean_dps; | |
| model2instance -> tp_genprotimage; | |
| model2instance -> tp_stretch3d; | |
| model2microtubules -> MT_synth; | |
| moveObjects -> ml_initparam; | |
| mwpath -> getvarfrom; | |
| mwpath -> isoctavemesh; | |
| objectMovementModel -> AdjustResolutions; | |
| objectMovementModel -> img2tif; | |
| objectMovementModel -> ml_imaddobj2; | |
| objectMovementModel -> ml_initparam; | |
| objectMovementModel -> ml_ls; | |
| objectMovementModel -> ml_readimage; | |
| objectMovementModel -> moveObjects; | |
| packableObject -> CompressLib; | |
| plotmesh -> meshcentroid; | |
| plotmesh -> plotsurf; | |
| plotmesh -> plottetra; | |
| plotmesh -> qmeshcut; | |
| plotsurf -> getvarfrom; | |
| plotsurf -> isoctavemesh; | |
| plottetra -> getvarfrom; | |
| plottetra -> isoctavemesh; | |
| plottetra -> plotsurf; | |
| plottetra -> volface; | |
| qmeshcut -> getplanefrom3pt; | |
| removeisolatedsurf -> finddisconnsurf; | |
| render_point_3d_windowed -> Greedy3D_lambda_pre_compressed; | |
| render_point_3d_windowed -> WindowedImage; | |
| render_point_3d_windowed -> shape_interp_track; | |
| reshape_contrast -> contrast_stretch; | |
| reshape_contrast -> reshape_2d; | |
| savesurfpoly -> bbxflatsegment; | |
| savesurfpoly -> extractloops; | |
| savesurfpoly -> internalpoint; | |
| savesurfpoly -> surfedge; | |
| setupSBML -> addAnnotation; | |
| setupSBML -> addInitAssign; | |
| setupSBML -> addSpecies; | |
| slml2img -> AdjustResolutions; | |
| slml2img -> clean_synthesis_temp_files; | |
| slml2img -> createSBMLFrameworkstruct; | |
| slml2img -> createSBMLstruct; | |
| slml2img -> getBox; | |
| slml2img -> get_cellorganizer_default_parameters; | |
| slml2img -> im2blender; | |
| slml2img -> img2tif; | |
| slml2img -> ims2index; | |
| slml2img -> instance2SBML_mod; | |
| slml2img -> isMatFile; | |
| slml2img -> isaFile; | |
| slml2img -> ml_initparam; | |
| slml2img -> model2img; | |
| slml2img -> slml2model; | |
| surf2mesh -> deletemeshfile; | |
| surf2mesh -> fallbackexeext; | |
| surf2mesh -> getexeext; | |
| surf2mesh -> getvarfrom; | |
| surf2mesh -> mcpath; | |
| surf2mesh -> meshresample; | |
| surf2mesh -> mwpath; | |
| surf2mesh -> readtetgen; | |
| surf2mesh -> saveoff; | |
| surf2mesh -> savesurfpoly; | |
| surfedge -> isoctavemesh; | |
| surfinterior -> raytrace; | |
| surfinterior -> surfplane; | |
| surfseeds -> finddisconnsurf; | |
| surfseeds -> surfinterior; | |
| tp_gengaussobjimg -> findObjFit; | |
| tp_gengaussobjimg -> ml_bcimg; | |
| tp_gengaussobjimg -> ml_gaussimg; | |
| tp_gengaussobjimg -> ml_gaussobj; | |
| tp_gengaussobjimg -> ml_imaddobj2; | |
| tp_gengaussobjimg -> ml_initparam; | |
| tp_gengaussobjimg -> ml_rnd; | |
| tp_gennucshape -> ml_initparam; | |
| tp_gennucshape -> plotcylsurf; | |
| tp_genprotimage -> ml_celldistcode2; | |
| tp_genprotimage -> ml_mappos; | |
| tp_genprotimage -> tp_gengaussobjimg; | |
| tp_genspsurf -> ml_initparam; | |
| tp_genspsurf -> ml_rnd; | |
| tp_genspsurf -> tp_pvalue; | |
| tz_getlinept -> tz_genmsg; | |
| tz_rotateobj -> ml_obj2img; | |
| tz_showpts_2d -> tz_genmsg; | |
| tz_showpts_2d -> tz_getlinept; | |
| varargin2struct -> mergestruct; | |
| vol2mesh -> cgals2m; | |
| vol2mesh -> cgalv2m; | |
| vol2mesh -> surf2mesh; | |
| vol2mesh -> vol2surf; | |
| vol2restrictedtri -> deletemeshfile; | |
| vol2restrictedtri -> fallbackexeext; | |
| vol2restrictedtri -> getexeext; | |
| vol2restrictedtri -> getvarfrom; | |
| vol2restrictedtri -> mcpath; | |
| vol2restrictedtri -> mwpath; | |
| vol2restrictedtri -> readoff; | |
| vol2restrictedtri -> saveinr; | |
| vol2surf -> binsurface; | |
| vol2surf -> finddisconnsurf; | |
| vol2surf -> maxsurf; | |
| vol2surf -> meshcheckrepair; | |
| vol2surf -> meshresample; | |
| vol2surf -> removeisolatedsurf; | |
| vol2surf -> surfinterior; | |
| vol2surf -> surfseeds; | |
| vol2surf -> vol2restrictedtri; | |
| volface -> surfedge; | |
| } |
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