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Helper script that downloads the 2D 3T3 RandTag Set 2 dataset from the Murphy Lab at Carnegie Mellon University
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#!/bin/bash | |
echo "*********************" | |
echo "* LICENSE AGREEMENT *" | |
echo "*********************" | |
echo "All data downloaded from the Murphy Lab web site (http://murphylab.web.cmu.edu) remain the property of the | |
Murphy" | |
echo "Lab. You are granted a non-exclusive license to use these images for non-commercial, research purposes, with the" | |
echo "following conditions: (a) you agree to include a reference to" | |
echo "" | |
echo "E. Garcia Osuna, J. Hua, N.W. Bateman, T. Zhao, P.B. Berget and R.F. Murphy (2007). Large-Scale " | |
echo "Automated Analysis of Protein Subcellular Location Patterns in Randomly-Tagged 3T3 Cells." | |
echo "Annals Biomed. Eng. 35:10'081-1087." | |
echo "" | |
echo "when presenting or publishing your results, (b) you agree to send a copy of any paper or abstract (upon its" | |
echo "acceptance for publication or presentation) by FAX, email or regular mail to Dr. Murphy, and (c) you agree not to " | |
echo "distribute these images without inclusion of this notice." | |
echo "Dr. Robert F. Murphy" | |
echo "Professor of Biological Sciences, Biomedical Engineering and Machine Learning" | |
echo "Carnegie Mellon University" | |
echo "4400 Fifth Ave., Pittsburgh, PA 15213" | |
echo "FAX: 412-268-6571" | |
echo "email: murphy@cmu.edu" | |
WEBSITE='http://murphylab.web.cmu.edu/data/pslid' | |
FILES=('080124MFLPC_BM1_IC100.tgz' | |
'080124MFLPC_BM1_KSR.tgz' | |
'080130MFLPC_BN1_KSR.tgz' | |
'080131MFLPC_BN2_KSR.tgz' | |
'080206MFLPC_BO2_KSR.tgz' | |
'080207MFLPC_BO1_KSR.tgz' | |
'080215MFLPC_BP1_KSR.tgz' | |
'080223MFLPC_BQ1_KSR.tgz' | |
'080224MFLPC_BQ2_KSR.tgz' | |
'080229MFLPC_BR2_KSR.tgz' | |
'080301MFLPC_BR1_KSR.tgz' | |
'080306MFLPC_BS2_KSR.tgz' | |
'080307MFLPC_BS1_KSR.tgz' | |
'080314MFLPC_BT2_KSR.tgz' | |
'080316MFLPC_BT1_IC100.tgz' | |
'080321MFLPC_BU1_IC100.tgz' | |
'080322MFLPC_BU2_IC100.tgz' | |
'080327MFLPC_BV2_IC100.tgz' | |
'080328MFLPC_BV1_IC100.tgz' | |
'080403MFLPC_BW1_IC100.tgz' | |
'080404MFLPC_BW2_IC100.tgz' | |
'080410MFLPC_BX1_IC100.tgz' | |
'080411MFLPC_BX2_IC100.tgz' | |
'081006MFLPC_CV1_IC100.tgz' | |
'081013MFLPC_CW1_IC100_A-D.tgz' | |
'081013MFLPC_CW1_IC100_E-H.tgz' | |
'081020MFLPC_CX1_IC100.tgz' | |
'081027MFLPC_CY1_IC100_A-D.tgz' | |
'081027MFLPC_CY1_IC100_E-H.tgz' | |
'081103MFLPC_CZ1_IC100_A-D.tgz' | |
'081103MFLPC_CZ1_IC100_E-H.tgz' | |
'081117MFLPC_DA2_IC100_A-B.tgz' | |
'081117MFLPC_DA2_IC100_C-D.tgz' | |
'081117MFLPC_DA2_IC100_E-F.tgz' | |
'081117MFLPC_DA2_IC100_G-H.tgz' | |
'081118MFLPC_DA1_IC100_A-B.tgz' | |
'081118MFLPC_DA1_IC100_C-D.tgz' | |
'081118MFLPC_DA1_IC100_E-F.tgz' | |
'081118MFLPC_DA1_IC100_G-H.tgz' | |
'081125JMHLPC_DB1_IC100_A-B.tgz' | |
'081125JMHLPC_DB1_IC100_C-D.tgz' | |
'081125JMHLPC_DB1_IC100_E-F.tgz' | |
'081125JMHLPC_DB1_IC100_G-H.tgz' | |
'081126JMHLPC_DB2_IC100_A-B.tgz' | |
'081126JMHLPC_DB2_IC100_C-D.tgz' | |
'081126JMHLPC_DB2_IC100_E-F.tgz' | |
'081126JMHLPC_DB2_IC100_G-H.tgz' | |
'081202MFLPC_DC1_IC100_A-B.tgz' | |
'081202MFLPC_DC1_IC100_C-D.tgz' | |
'081202MFLPC_DC1_IC100_E-F.tgz' | |
'081202MFLPC_DC1_IC100_G-H.tgz' | |
'081222MFLPC_DD1_IC100_A-B.tgz' | |
'081222MFLPC_DD1_IC100_C-D.tgz' | |
'081222MFLPC_DD1_IC100_E-F.tgz' | |
'081222MFLPC_DD1_IC100_G-H.tgz' | |
'081223MFLPC_DE1_IC100_A-B.tgz' | |
'081223MFLPC_DE1_IC100_C-D.tgz' | |
'081223MFLPC_DE1_IC100_E-F.tgz' | |
'081223MFLPC_DE1_IC100_G-H.tgz' | |
'090121MFLPC_DF1_IC100_A-B.tgz' | |
'090121MFLPC_DF1_IC100_C-D.tgz' | |
'090121MFLPC_DF1_IC100_E-F.tgz' | |
'090121MFLPC_DF1_IC100_G-H.tgz' | |
'090127MFLPC_DF2_IC100_A-B.tgz' | |
'090127MFLPC_DF2_IC100_C-D.tgz' | |
'090127MFLPC_DF2_IC100_E-F.tgz' | |
'090127MFLPC_DF2_IC100_G-H.tgz' | |
'090128MFLPC_DG1_IC100_A-B.tgz' | |
'090128MFLPC_DG1_IC100_C-D.tgz' | |
'090128MFLPC_DG1_IC100_E-F.tgz' | |
'090128MFLPC_DG1_IC100_G-H.tgz' | |
'090203MFLPC_DG2_IC100_A-B.tgz' | |
'090203MFLPC_DG2_IC100_C-D.tgz' | |
'090203MFLPC_DG2_IC100_E-F.tgz' | |
'090203MFLPC_DG2_IC100_G-H.tgz' | |
'090208MFLPC_DH1_IC100_A-B.tgz' | |
'090208MFLPC_DH1_IC100_C-D.tgz' | |
'090208MFLPC_DH1_IC100_E-F.tgz' | |
'090208MFLPC_DH1_IC100_G-H.tgz' | |
'090209MFBK_DH2_IC100_A-B.tgz' | |
'090209MFBK_DH2_IC100_C-D.tgz' | |
'090209MFBK_DH2_IC100_E-F.tgz' | |
'090209MFBK_DH2_IC100_G-H.tgz' | |
'090217MFLPC_DI1_IC100_A-B.tgz' | |
'090217MFLPC_DI1_IC100_C-D.tgz' | |
'090217MFLPC_DI1_IC100_E-F.tgz' | |
'090217MFLPC_DI1_IC100_G-H.tgz' | |
'090222MFLPC_DJ1_IC100_A-B.tgz' | |
'090222MFLPC_DJ1_IC100_C-D.tgz' | |
'090222MFLPC_DJ1_IC100_E-F.tgz' | |
'090222MFLPC_DJ1_IC100_G-H.tgz' | |
'090223MFBK_DJ2_IC100_A-B.tgz' | |
'090223MFBK_DJ2_IC100_C-D.tgz' | |
'090223MFBK_DJ2_IC100_E-F.tgz' | |
'090223MFBK_DJ2_IC100_G-H.tgz' ) | |
for FILE in "${FILES[@]}" | |
do | |
echo Downloading "$WEBSITE"/"$FILE" to `pwd` | |
wget --quiet -nc "$WEBSITE"/"$FILE" | |
if [ -f "$FILE" ]; then | |
echo "Decompressing" "$FILE" | |
tar -xf $FILE | |
echo "Removing file" "$FILE" | |
rm -fv $FILE | |
fi | |
done |
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