icaoberg

#!/bin/bash

QUEUE_NAME=model1

pbsnodes | grep -B 3 "properties = $QUEUE_NAME" | grep "compute"

icaoberg

#!/bin/bash

pbsnodes | grep -B 1 "state = down" | grep "compute"

icaoberg

#!/bin/bash

#Restricts job selection to those in  the specified states
#E(xiting state)
#H(eld state)
#Q(ueued state)
#R(unning state)
#T(ransiting  state)
#W(aiting state)

icaoberg

#!/bin/bash

#http://stackoverflow.com/questions/12574604/scipy-install-on-mountain-lion-failing

mkdir -p build
cd build
git clone https://github.com/numpy/numpy.git
python build setup.py
python install setup.py
pip install scipy

icaoberg

#!/bin/bash

find . -name "*.pyc" -exec git rm {} \;
git commit -m "Removed compiled python files in distribution left after last commit"

icaoberg

#!/bin/bash

# Author: Ivan E. Cao-Berg (icaoberg@scs.cmu.edu)
#
# Copyright (C) 2013 Murphy Lab
# Lane Center for Computational Biology
# School of Computer Science
# Carnegie Mellon University
#
# This program is free software; you can redistribute it and/or modify

icaoberg

#!/bin/bash

USERNAME=icaoberg

#to kill all the jobs
qstat -u$USERNAME | grep "$USERNAME" | cut -d"." -f1 | xargs qdel

#to kill all the running jobs
qstat -u$USERNAME | grep "R" | cut -d"." -f1 | xargs qdel

icaoberg

#!/bin/bash

bin/omero group list

icaoberg

#!/bin/bash

GROUPNAME=developers

bin/omero group add $GROUPNAME

icaoberg

#!/bin/bash

GROUPNAME=developers

omero group list | grep $GROUPNAME | cut -d"|" -f1