icaoberg icaoberg
icaoberg
/ gist:2581526
Created
May 2, 2012 23:17
Retrieves a list of image ids (iids) owned by the user making the connection to an omero.server using the current API
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Ivan E. Cao-Berg (icaoberg@cmu.edu) | |
| # | |
| # Copyright (C) 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
icaoberg
/ gist:2581913
Created
May 2, 2012 23:33
Retrieves a list of projects ids (prids) owned by the user making the connection to an omero.server using the current API
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Ivan E. Cao-Berg (icaoberg@cmu.edu) | |
| # | |
| # Copyright (C) 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Ivan E. Cao-Berg (icaoberg@cmu.edu) | |
| # | |
| # Copyright (C) 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Ivan E. Cao-Berg (icaoberg@cmu.edu) | |
| # | |
| # Copyright (C) 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Ivan E. Cao-Berg (icaoberg@cmu.edu) | |
| # | |
| # Copyright (C) 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
icaoberg
/ img2features.py
Created
June 21, 2012 21:22
Shows how to calculate the SLF34 features subset using using pyslic
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Ivan E. Cao-Berg (icaoberg@scs.cmu.edu) | |
| # | |
| # Copyright (C) 2012 Murphy Lab | |
| # Lane Center for Computational Biology | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Michelle Mackie | |
| # | |
| # Copyright (C) Summer 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Author: Michelle Mackie | |
| # | |
| # Copyright (C) Summer 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published | |
| # by the Free Software Foundation; either version 2 of the License, | |
| # or (at your option) any later version. |
icaoberg
/ gist:3079133
Created
July 9, 2012 21:33
Train a generative model of subcellular location using the LAMP2 dataset from the Murphy Lab on CellOrganizer
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| function answer = lamp2( directory ) | |
| %LAMP2 Helper script that shows how to train a generative model of | |
| %subcelullar location using the LAMP2 dataset from the Murphy Lab. | |
| % Author: Ivan E. Cao-Berg (icaoberg@scs.cmu.edu) | |
| % | |
| % Copyright (C) 2012 Murphy Lab | |
| % Lane Center for Computational Biology | |
| % School of Computer Science | |
| % Carnegie Mellon University |
icaoberg
/ gitremovetag.sh
Created
August 10, 2012 17:37
Remove a tag from a Git repo and push the change to Github/BitBucket
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/bash | |
| # Author: Ivan E. Cao-Berg (icaoberg@cmu.edu) | |
| # | |
| # Copyright (C) 2012 | |
| # School of Computer Science | |
| # Carnegie Mellon University | |
| # | |
| # This program is free software; you can redistribute it and/or modify | |
| # it under the terms of the GNU General Public License as published |
OlderNewer