Ivan Krukov ivan-krukov

## bedtools_cheatsheet.md

      
              1 file
            
          
              20 forks
            
          
              0 comments
            
          
              73 stars
            
          
                ilevantis
                / bedtools_cheatsheet.md
            
            
              Last active
              April 10, 2024 19:12
            
              
                Bedtools cheatsheet
              
          
    Bedtools Cheatsheet

General:


Tools
Description


flank
Create new intervals from the flanks of existing intervals.


slop
Adjust the size of intervals.


shift
Adjust the position of intervals.


subtract
Remove intervals based on overlaps b/w two files.


## 00-install-intel-mkl-64bit
# Option 1: Use apt-get

# keys taken from https://software.intel.com/en-us/articles/installing-intel-free-libs-and-python-apt-repo
cd ~/GitHub/r-with-intel-mkl/
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB

sudo sh -c 'echo deb https://apt.repos.intel.com/mkl all main > /etc/apt/sources.list.d/intel-mkl.list'
sudo apt-get update && sudo apt-get install intel-mkl-64bit

## anonymous
<!DOCTYPE html>
<html>
<head>
  <meta charset="utf-8">
  <meta name="viewport" content="width=device-width">
  <title>Elementary observables</title>
</head>
<body>
<script src="https://unpkg.com/@reactivex/rxjs@5.0.3/dist/global/Rx.js"></script>
<button id='error'>Will throw</button>

## simplystats_thanksgiving.R
## transform the input to the output using rubiks-cube transformations and dplyr
require(dplyr)

## provided input
input <- data.frame(matrix(c("h","a","t","t","i","v","i","g","k","s","g","n","n","g","n","i"),
                           4,
                           4,
                           byrow=TRUE,
                           dimnames=list(NULL,paste0("col",1:4))),
                    stringsAsFactors=FALSE)

## EmacsKeyBinding.dict
{
/* Keybindings for emacs emulation.  Compiled by Jacob Rus.
 *
 * This is a pretty good set, especially considering that many emacs bindings
 * such as C-o, C-a, C-e, C-k, C-y, C-v, C-f, C-b, C-p, C-n, C-t, and
 * perhaps a few more, are already built into the system.
 *
 * BEWARE:
 * This file uses the Option key as a meta key.  This has the side-effect
 * of overriding Mac OS keybindings for the option key, which generally

## README.md

      
              3 files
            
          
              4 forks
            
          
              5 comments
            
          
              30 stars
            
          
                ngauthier
                / README.md
            
            
              Created
              July 5, 2012 20:10
            
              
                Rdio "native" in linux
              
          
    I like Rdio and linux. Rdio works great in a browser except for one thing: keyboard shortcuts!!!
When coding, I like to be able to play/pause my music quickly, meaning I don't want to switch windows. I figured out a way to do this:
Google Chrome --app

First, I made a file in my ~/bin called rdio that runs:
google-chrome --app=http://rdio.com

  
## index.html
<!DOCTYPE html>
<html>
<head>
   <title>D3.xml Example</title>
   <script type="text/javascript" src="http://mbostock.github.com/d3/d3.v2.js"></script>
   <style type="text/css">
.chart div {
   font: 10px sans-serif;
   background-color: steelblue;
   text-align: right;

## sed cheatsheet

FILE SPACING:

 # double space a file
 sed G

 # double space a file which already has blank lines in it. Output file
 # should contain no more than one blank line between lines of text.
 sed '/^$/d;G'

## current_utc_time.c
/*
author: jbenet
os x, compile with: gcc -o testo test.c
linux, compile with: gcc -o testo test.c -lrt
*/

#include <time.h>
#include <sys/time.h>
#include <stdio.h>
Tools	Description
flank	Create new intervals from the flanks of existing intervals.
slop	Adjust the size of intervals.
shift	Adjust the position of intervals.
subtract	Remove intervals based on overlaps b/w two files.
	# Option 1: Use apt-get

	# keys taken from https://software.intel.com/en-us/articles/installing-intel-free-libs-and-python-apt-repo
	cd ~/GitHub/r-with-intel-mkl/
	wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
	apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB

	sudo sh -c 'echo deb https://apt.repos.intel.com/mkl all main > /etc/apt/sources.list.d/intel-mkl.list'
	sudo apt-get update && sudo apt-get install intel-mkl-64bit
	<!DOCTYPE html>
	<html>
	<head>
	<meta charset="utf-8">
	<meta name="viewport" content="width=device-width">
	<title>Elementary observables</title>
	</head>
	<body>
	<script src="https://unpkg.com/@reactivex/rxjs@5.0.3/dist/global/Rx.js"></script>
	<button id='error'>Will throw</button>
	## transform the input to the output using rubiks-cube transformations and dplyr
	require(dplyr)

	## provided input
	input <- data.frame(matrix(c("h","a","t","t","i","v","i","g","k","s","g","n","n","g","n","i"),
	4,
	4,
	byrow=TRUE,
	dimnames=list(NULL,paste0("col",1:4))),
	stringsAsFactors=FALSE)
	{
	/* Keybindings for emacs emulation. Compiled by Jacob Rus.
	*
	* This is a pretty good set, especially considering that many emacs bindings
	* such as C-o, C-a, C-e, C-k, C-y, C-v, C-f, C-b, C-p, C-n, C-t, and
	* perhaps a few more, are already built into the system.
	*
	* BEWARE:
	* This file uses the Option key as a meta key. This has the side-effect
	* of overriding Mac OS keybindings for the option key, which generally

	FILE SPACING:

	# double space a file
	sed G

	# double space a file which already has blank lines in it. Output file
	# should contain no more than one blank line between lines of text.
	sed '/^$/d;G'
	/*
	author: jbenet
	os x, compile with: gcc -o testo test.c
	linux, compile with: gcc -o testo test.c -lrt
	*/

	#include <time.h>
	#include <sys/time.h>
	#include <stdio.h>